Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,746,714 – 6,746,830 |
Length | 116 |
Max. P | 0.932046 |
Location | 6,746,714 – 6,746,830 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -17.30 |
Energy contribution | -17.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.86 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.784693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6746714 116 + 27905053 AUUUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUUCCAUUUUAUUCGUGCACCACGCGAUAUAUUUGUCAUAUCCACAU----AUACGACUGUAUAUC .........((((.....((((((......)))))).......((((((.((((....(((.......)))......)))).)))))))))).......((----((((....)))))). ( -19.70) >DroSec_CAF1 11005 116 + 1 AUUUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUUCCAUUUUAUUCGUGCACCACGCGAUAUAUUUGUCAUAUCCACAU----AUACGACUGUAUAUC .........((((.....((((((......)))))).......((((((.((((....(((.......)))......)))).)))))))))).......((----((((....)))))). ( -19.70) >DroSim_CAF1 15386 116 + 1 AUUUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUUCCAUUUUAUUCGUGCACCACGCGAUAUAUUUGUCAUAUCCACAU----AUACGACUGUAUAUC .........((((.....((((((......)))))).......((((((.((((....(((.......)))......)))).)))))))))).......((----((((....)))))). ( -19.70) >DroYak_CAF1 6995 120 + 1 AUUUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUUCCAUUUUAUUCGUGCACCACGCGAUAUAUUUGUCAUAUCCACAUAUGUAUACGACUGCAUAUC .........((((.....((((((......)))))).......((((((.((((....(((.......)))......)))).)))))))))).......(((((((......))))))). ( -21.20) >consensus AUUUACAUUUGACUUAAAUAUGCGUAUUUUCGCAUAAAUUACAAAAUAUUUCGCAUUCCAUUUUAUUCGUGCACCACGCGAUAUAUUUGUCAUAUCCACAU____AUACGACUGUAUAUC .........((((.....((((((......)))))).......((((((.((((....(((.......)))......)))).))))))))))............................ (-17.30 = -17.30 + 0.00)
Location | 6,746,714 – 6,746,830 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -24.86 |
Energy contribution | -24.68 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.48 |
Structure conservation index | 0.94 |
SVM decision value | 1.22 |
SVM RNA-class probability | 0.932046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6746714 116 - 27905053 GAUAUACAGUCGUAU----AUGUGGAUAUGACAAAUAUAUCGCGUGGUGCACGAAUAAAAUGGAAUGCGAAAUAUUUUGUAAUUUAUGCGAAAAUACGCAUAUUUAAGUCAAAUGUAAAU ((((((..(((((((----......)))))))...))))))(((((.((((..(((...(..(((((.....)))))..).)))..))))....)))))((((((.....)))))).... ( -26.30) >DroSec_CAF1 11005 116 - 1 GAUAUACAGUCGUAU----AUGUGGAUAUGACAAAUAUAUCGCGUGGUGCACGAAUAAAAUGGAAUGCGAAAUAUUUUGUAAUUUAUGCGAAAAUACGCAUAUUUAAGUCAAAUGUAAAU ((((((..(((((((----......)))))))...))))))(((((.((((..(((...(..(((((.....)))))..).)))..))))....)))))((((((.....)))))).... ( -26.30) >DroSim_CAF1 15386 116 - 1 GAUAUACAGUCGUAU----AUGUGGAUAUGACAAAUAUAUCGCGUGGUGCACGAAUAAAAUGGAAUGCGAAAUAUUUUGUAAUUUAUGCGAAAAUACGCAUAUUUAAGUCAAAUGUAAAU ((((((..(((((((----......)))))))...))))))(((((.((((..(((...(..(((((.....)))))..).)))..))))....)))))((((((.....)))))).... ( -26.30) >DroYak_CAF1 6995 120 - 1 GAUAUGCAGUCGUAUACAUAUGUGGAUAUGACAAAUAUAUCGCGUGGUGCACGAAUAAAAUGGAAUGCGAAAUAUUUUGUAAUUUAUGCGAAAAUACGCAUAUUUAAGUCAAAUGUAAAU ((((((..(((((((.((....)).)))))))...))))))(((((.((((..(((...(..(((((.....)))))..).)))..))))....)))))((((((.....)))))).... ( -26.80) >consensus GAUAUACAGUCGUAU____AUGUGGAUAUGACAAAUAUAUCGCGUGGUGCACGAAUAAAAUGGAAUGCGAAAUAUUUUGUAAUUUAUGCGAAAAUACGCAUAUUUAAGUCAAAUGUAAAU ((((((..(((((((..........)))))))...))))))(((((.((((..(((...(..(((((.....)))))..).)))..))))....)))))((((((.....)))))).... (-24.86 = -24.68 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:22 2006