Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,745,375 – 6,745,505 |
Length | 130 |
Max. P | 0.987719 |
Location | 6,745,375 – 6,745,465 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -24.86 |
Consensus MFE | -24.81 |
Energy contribution | -24.37 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.08 |
Mean z-score | -2.55 |
Structure conservation index | 1.00 |
SVM decision value | 2.09 |
SVM RNA-class probability | 0.987719 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6745375 90 + 27905053 GCCGAACAAAAUGCCAUCCAUCAUACAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAG ((((......(((((..............)))))..((.....(((((.((((((((.......)))))))))))))....))))))... ( -24.34) >DroSec_CAF1 10070 88 + 1 GCCAAACA--AUGCCAUCCAUCAUACAUGGGCAUACGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAG ((((....--(((((..............)))))..((.....(((((.((((((((.......)))))))))))))....))))))... ( -25.34) >DroYak_CAF1 5756 90 + 1 GCCAAACAAAAUGCCAUCCAUCAUGCAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAACAGUCGGUUUAUGUGAAAUGCUGGCCAG ............((((.(..((((((((.(((....)))...))))..(((((((((.......))))))))).))))...).))))... ( -24.90) >consensus GCCAAACAAAAUGCCAUCCAUCAUACAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAG ((((......(((((..............)))))..((.....(((((.((((((((.......)))))))))))))....))))))... (-24.81 = -24.37 + -0.44)
Location | 6,745,385 – 6,745,505 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.72 |
Mean single sequence MFE | -30.43 |
Consensus MFE | -28.56 |
Energy contribution | -27.90 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.10 |
Mean z-score | -2.02 |
Structure conservation index | 0.94 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6745385 120 + 27905053 AUGCCAUCCAUCAUACAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAGGAAGCGUAUACAUUCCAUUGUUUCCCAUUUUACUGGAUUU .....(((((......((((((....((.....(((((.((((((((.......)))))))))))))....))..))).(((((((............)))))))))).....))))).. ( -31.70) >DroSec_CAF1 10078 120 + 1 AUGCCAUCCAUCAUACAUGGGCAUACGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAGGAAACGUAUACUUUCCAUUGUUUCCCAUUUUACUGAAUUU ..(((((((((.....))))).....((.....(((((.((((((((.......)))))))))))))....))))))..(((((((............)))))))............... ( -29.50) >DroYak_CAF1 5766 119 + 1 AUGCCAUCCAUCAUGCAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAACAGUCGGUUUAUGUGAAAUGCUGGCCAGGAAGCGUCUACUUUCCAUUGUUUUCCAUUUUACUG-AUUU .........(((((((((.(((....)))...))))).(((((((((.......))))))))).((((((((..(((..(((((.(....))))))...)))...))))))))))-)).. ( -30.10) >consensus AUGCCAUCCAUCAUACAUGGGCAUAUGCUAAAGUGCAUUAAACUGACAUCAGCAGUCGGUUUAUGUAAAAUGCUGGCCAGGAAGCGUAUACUUUCCAUUGUUUCCCAUUUUACUG_AUUU ..(((((((((.....))))).....((.....(((((.((((((((.......)))))))))))))....))))))..(((((((............)))))))............... (-28.56 = -27.90 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:20 2006