Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,743,300 – 6,743,416 |
Length | 116 |
Max. P | 0.790388 |
Location | 6,743,300 – 6,743,416 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.98 |
Mean single sequence MFE | -24.00 |
Consensus MFE | -14.41 |
Energy contribution | -17.35 |
Covariance contribution | 2.94 |
Combinations/Pair | 1.10 |
Mean z-score | -1.92 |
Structure conservation index | 0.60 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.790388 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6743300 116 + 27905053 GUUUGGAAAUUGGCUAGAGUUACUUUUUAAUAGAAGUGCCAUUAUGCCAAAGAGUACAAAAUGAAAUGGGAAAUGGGUUCCGUAAAUCGUUUUGUUUUUCGAAUAUUUAUUAUGUU---- (((((((((((((((((.(.(((((((....))))))).).))).))))).....(((((((((.((((((......))))))...))))))))))))))))))............---- ( -28.80) >DroSec_CAF1 8078 90 + 1 GUUUGGAAAUUGGCAAGAGUUACUUUUUAAUAAAAGUGCAAUUAUGCCAAAGAGUACAAAAUGAAAUGGGAAAUAGGAUCCGUAAAUCGU------------------------------ .((((....((((((.((..(((((((....)))))))...)).))))))......))))((((.(((((........)))))...))))------------------------------ ( -16.00) >DroSim_CAF1 12417 116 + 1 GUUUGGAAAUUGGCAAGAGUUACUUUUUAAUAAAAGUGCAAUUAUGCCAAAGAGUACAAAAUGAAAUGGGAAAUAGGAUCCUUAAAUCGUUUUGUAUAUUGAAUAAUUAUUAUGUU---- (((..(...((((((.((..(((((((....)))))))...)).))))))...(((((((((((...((((.......))))....))))))))))).)..)))............---- ( -28.20) >DroYak_CAF1 3405 120 + 1 GUUUGGAAAUUGGCAAGAGUUGCUUUUUAAUAAAAGUAAAAUUAUGCCAAAGAGUACAAAAUAUGACGGGAAAUGGGCUGCAGAAAUCGUUUUACAUAUGGCAUCUAUAUUAUUUCGCAC ...((((((((((((....((((((((....)))))))).....))))))(((((.....(((((....(((((((.(....)...))))))).))))).)).)))......)))).)). ( -23.00) >consensus GUUUGGAAAUUGGCAAGAGUUACUUUUUAAUAAAAGUGCAAUUAUGCCAAAGAGUACAAAAUGAAAUGGGAAAUAGGAUCCGUAAAUCGUUUUGUAUAU_GAAUAUUUAUUAUGUU____ .........((((((.((..(((((((....)))))))...)).))))))...(((((((((((....(((.......))).....)))))))))))....................... (-14.41 = -17.35 + 2.94)
Location | 6,743,300 – 6,743,416 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.98 |
Mean single sequence MFE | -16.45 |
Consensus MFE | -8.22 |
Energy contribution | -8.97 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.24 |
Structure conservation index | 0.50 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.693488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6743300 116 - 27905053 ----AACAUAAUAAAUAUUCGAAAAACAAAACGAUUUACGGAACCCAUUUCCCAUUUCAUUUUGUACUCUUUGGCAUAAUGGCACUUCUAUUAAAAAGUAACUCUAGCCAAUUUCCAAAC ----................((((.((((((.((.....((((.....))))....)).)))))).....(((((.((..(..((((........))))..)..)))))))))))..... ( -16.70) >DroSec_CAF1 8078 90 - 1 ------------------------------ACGAUUUACGGAUCCUAUUUCCCAUUUCAUUUUGUACUCUUUGGCAUAAUUGCACUUUUAUUAAAAAGUAACUCUUGCCAAUUUCCAAAC ------------------------------..((.....(((.......)))....))..((((......((((((.......((((((....))))))......))))))....)))). ( -12.72) >DroSim_CAF1 12417 116 - 1 ----AACAUAAUAAUUAUUCAAUAUACAAAACGAUUUAAGGAUCCUAUUUCCCAUUUCAUUUUGUACUCUUUGGCAUAAUUGCACUUUUAUUAAAAAGUAACUCUUGCCAAUUUCCAAAC ----....................(((((((.((.....(((.......)))....)).)))))))....((((((.......((((((....))))))......))))))......... ( -17.92) >DroYak_CAF1 3405 120 - 1 GUGCGAAAUAAUAUAGAUGCCAUAUGUAAAACGAUUUCUGCAGCCCAUUUCCCGUCAUAUUUUGUACUCUUUGGCAUAAUUUUACUUUUAUUAAAAAGCAACUCUUGCCAAUUUCCAAAC ((((((((((....(((((.....((((..........))))...))))).......))))))))))...((((((........(((((....))))).......))))))......... ( -18.46) >consensus ____AACAUAAUAAAUAUUC_AUAUACAAAACGAUUUACGGAUCCCAUUUCCCAUUUCAUUUUGUACUCUUUGGCAUAAUUGCACUUUUAUUAAAAAGUAACUCUUGCCAAUUUCCAAAC ............................................................((((......((((((.......((((((....))))))......))))))....)))). ( -8.22 = -8.97 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:15 2006