Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,742,690 – 6,742,801 |
Length | 111 |
Max. P | 0.873252 |
Location | 6,742,690 – 6,742,801 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.22 |
Mean single sequence MFE | -19.09 |
Consensus MFE | -16.52 |
Energy contribution | -16.77 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.93 |
Structure conservation index | 0.87 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873252 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6742690 111 + 27905053 ACUGCAUUUGUGACACACACUGUCAUUUCCUUACACACUGUCUAUAUACCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUC ((((.....((((((.....))))))............(((((..((((.............))))...)))))..((((((......))))))...........)))---------).. ( -17.62) >DroSec_CAF1 7473 111 + 1 ACUGCAUUUGUGACAUACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUG ((((.....((((((.....))))))((((.((((..........................))))....))))...((((((......))))))...........)))---------).. ( -18.97) >DroSim_CAF1 11814 111 + 1 ACUGCAUUUGUGACAUACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG---------UUG ((((.....((((((.....))))))((((.((((..........................))))....))))...((((((......))))))...........)))---------).. ( -18.97) >DroYak_CAF1 2791 120 + 1 ACUGCAUUUGUGACACACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAGAAUGGCCAUUCC ...((....((((((.....)))))).......((.((((..................(((........)))....((((((......))))))...........)))).))))...... ( -20.80) >consensus ACUGCAUUUGUGACACACACUGUCAUGUCCUUACACUCUGUCUAUAUCCCCAUUUUUAUCCUGUAUCCCGGACAUCGUUGCUUUCAUUAGCAGCUACCACUUUUUCAG_________UUC .(((.....(((............((((((.((((..........................))))....)))))).((((((......))))))...))).....)))............ (-16.52 = -16.77 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:11 2006