Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,742,471 – 6,742,573 |
Length | 102 |
Max. P | 0.935851 |
Location | 6,742,471 – 6,742,573 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.14 |
Mean single sequence MFE | -22.78 |
Consensus MFE | -18.20 |
Energy contribution | -17.95 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.17 |
Structure conservation index | 0.80 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6742471 102 + 27905053 ------------------CUUCAGAGACUUUCUGUGAUUGCUCGAUCUCCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCCUUUCCAAUUGAUAUGAUCUGGCUUUCUU ------------------..(((.((.....)).)))......((...((((.((((.(((....(((((.......(((((((....)))))))))))).))))))).))))...)).. ( -26.41) >DroSec_CAF1 7266 102 + 1 ------------------CUUCAGAGACUUUCUGUGAUUGCUGGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU ------------------..(((.((.....)).)))..(..(((....(((.((((.(((....(((((....(((((.......)))))....))))).))))))).))))))..).. ( -20.20) >DroSim_CAF1 11607 102 + 1 ------------------CUUCAGAGACUUUCUGUGAUUGCUCGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU ------------------....(((((......((((....))))...((((.((((.(((....(((((....(((((.......)))))....))))).))))))).)))).))))). ( -20.10) >DroYak_CAF1 2558 120 + 1 CUUUUCUUUCUUUAACAACUUCAAAGGCUUUCUGUGAUUGCCCGCUCUUCAGUUGAUUAUCCUUUAUUGGUUUCGCUAGAAGCUCAUUGGCAUUUCCAACUGAUAUGAUCUGGCUUUCUU ...................................((..(((.(.((.(((((((...((((...((.((((((....)))))).)).)).))...)))))))...)).).)))..)).. ( -24.40) >consensus __________________CUUCAGAGACUUUCUGUGAUUGCUCGCUCUUCAGUUCAUUAUCUUUUAUUGGUUUCGUCAAAGGCUUAUUGGCAUUUCCAAUUGAUAUGAUCUGGCUUUCUU ....................(((.((.....)).)))...........((((.((((.(((....(((((....(((((.......)))))....))))).))))))).))))....... (-18.20 = -17.95 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:10 2006