Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,741,654 – 6,741,774 |
Length | 120 |
Max. P | 0.945795 |
Location | 6,741,654 – 6,741,774 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.92 |
Mean single sequence MFE | -45.15 |
Consensus MFE | -42.71 |
Energy contribution | -43.03 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.03 |
Mean z-score | -2.62 |
Structure conservation index | 0.95 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.945795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6741654 120 + 27905053 UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUUCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGCCAUCGUCGCCGCAAAUCU .(((((((((((((.(((.(((((((((((.(((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....(.((......)).).........)))))... ( -41.20) >DroSec_CAF1 6410 120 + 1 UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGACGCCGCAAAUCU .(((((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....((((......)))).........)))))... ( -45.70) >DroSim_CAF1 10744 120 + 1 UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU .(((((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))).....((((......)))).........)))))... ( -45.70) >DroYak_CAF1 1664 120 + 1 UUUUGGCGCUGAAGAGCGCGGCGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU ....((((((((((.(((.(((((((((.(((((((.(.((.....)).).))))).)))))))))))..)))...)))))))......((((......))))......)))........ ( -48.00) >consensus UUUUGCCGCUGAAGAGCGCGGUGCUUAGAGGGACUUAUGCAAAUAUUGGAGGAGUCAUCCUGGGCGCCAACGUCAACUUCAGCGUUAUAGCCAUCUCAUUGGCAUCGUCGCCGCAAAUCU .(((((((((((((.(((.(((((((((...(((((.(.((.....)).).)))))...)))))))))..)))...)))))))).....((((......)))).........)))))... (-42.71 = -43.03 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:09 2006