Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,740,892 – 6,741,038 |
Length | 146 |
Max. P | 0.974952 |
Location | 6,740,892 – 6,741,002 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -25.81 |
Energy contribution | -25.88 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.12 |
Structure conservation index | 0.87 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935103 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6740892 110 + 27905053 UUUGGCUUCAAACAGGUGGGCGCCACAAUUACUAAAUGUUGCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAGAGGCAAUGGCAAAGG---------- ....(((((......((((...))))..........(.(((((((((..((((((((((.........)))))..))))).))))))))).)..)))))...........---------- ( -29.20) >DroSec_CAF1 5672 113 + 1 UUUGGCUUCAAACAGGUGGGCGCCACAAUUACUAAAUGUUGCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC-------AA ..((((((((......)))).)))).............(((((((((..((((((((((.........)))))..))))).))))))))).((....((....))....))-------.. ( -28.50) >DroSim_CAF1 10005 113 + 1 UUUGGCUUCAAACAGGUGGGCGCCACAAUUACUAAAUGUUGCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC-------AA ..((((((((......)))).)))).............(((((((((..((((((((((.........)))))..))))).))))))))).((....((....))....))-------.. ( -28.50) >DroYak_CAF1 208 120 + 1 UUUGGCUUCAAACAGGUGGGCGCCACAAUUACUAAAUGUUGCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAGCGCAAAGGCAACAGCAAGAGCGAAAUCAAA .(((..(((......((((...))))...........((((((((((..((((((((((.........)))))..))))).))))))))))((....((....))....)))))..))). ( -33.00) >consensus UUUGGCUUCAAACAGGUGGGCGCCACAAUUACUAAAUGUUGCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC_______AA ..((((((((......)))).)))).............(((((((((..((((((((((.........)))))..))))).))))))))).((....((....))....))......... (-25.81 = -25.88 + 0.06)
Location | 6,740,892 – 6,741,002 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -30.27 |
Consensus MFE | -27.51 |
Energy contribution | -27.57 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.08 |
Structure conservation index | 0.91 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6740892 110 - 27905053 ----------CCUUUGCCAUUGCCUCUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGCAACAUUUAGUAAUUGUGGCGCCCACCUGUUUGAAGCCAAA ----------.....(((((.....(((..(((((((((((((((..(((((.........)))))))))).))))))))))....))).....)))))..................... ( -29.00) >DroSec_CAF1 5672 113 - 1 UU-------GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGCAACAUUUAGUAAUUGUGGCGCCCACCUGUUUGAAGCCAAA ..-------..(((..(.(((((...((..(((((((((((((((..(((((.........)))))))))).))))))))))))....))))).)..))).................... ( -30.50) >DroSim_CAF1 10005 113 - 1 UU-------GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGCAACAUUUAGUAAUUGUGGCGCCCACCUGUUUGAAGCCAAA ..-------..(((..(.(((((...((..(((((((((((((((..(((((.........)))))))))).))))))))))))....))))).)..))).................... ( -30.50) >DroYak_CAF1 208 120 - 1 UUUGAUUUCGCUCUUGCUGUUGCCUUUGCGCUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGCAACAUUUAGUAAUUGUGGCGCCCACCUGUUUGAAGCCAAA .(((..(((((....)).((..(..((((..((((((((((((((..(((((.........)))))))))).))))))))).......))))..)..))............)))..))). ( -31.10) >consensus UU_______GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGCAACAUUUAGUAAUUGUGGCGCCCACCUGUUUGAAGCCAAA ...............((.(((((.......(((((((((((((((..(((((.........)))))))))).))))))))))......))))).))(((...((......))..)))... (-27.51 = -27.57 + 0.06)
Location | 6,740,932 – 6,741,038 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -27.73 |
Consensus MFE | -22.67 |
Energy contribution | -22.30 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -2.63 |
Structure conservation index | 0.82 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6740932 106 + 27905053 GCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAGAGGCAAUGGCAAAGG------------CAAAAGCAAAAGCA--CAGAGGAGCCCAAAGCGUUGAA (((((((..((((((((((.........)))))..))))).)))))))((.((...(((..((((....(------------(....))....)).--)).....)))....)).))... ( -25.70) >DroSec_CAF1 5712 113 + 1 GCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC-------AACUCAAAAGCAAAAGCACACAGAGGAGCCCAAAGCGUUGAA (((((((..((((((((((.........)))))..))))).)))))))..........((((.((...(((-------..(((....((....)).....)))..)))....)))))).. ( -29.80) >DroSim_CAF1 10045 111 + 1 GCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC-------AAGGCAAAAGCAAAAGCA--CAGAGGAGCCCAAAGCGUUGAA (((((((..((((((((((.........)))))..))))).)))))))........(....)..(((((..-------..(((....((....)).--(....).))).....))))).. ( -25.90) >DroYak_CAF1 248 118 + 1 GCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAGCGCAAAGGCAACAGCAAGAGCGAAAUCAAAAGCAAAAGCAAAAGCA--CCGAGGAGCCCAAAGCGUUGAA (((((((..((((((((((.........)))))..))))).)))))))(((((...(((..(.((....))..........((....)).......--....)..)))....)))))... ( -29.50) >consensus GCUGCAGCAGCUUUUAAAUCAAAUGAAUAUUUAUUAAAGCACUGCAGCAAGGCAAAGGCAACAGCAACGGC_______AA_GCAAAAGCAAAAGCA__CAGAGGAGCCCAAAGCGUUGAA (((((((..((((((((((.........)))))..))))).)))))))...((....))..((((......................((....))..........((.....)))))).. (-22.67 = -22.30 + -0.37)
Location | 6,740,932 – 6,741,038 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.47 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -25.20 |
Energy contribution | -25.45 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.51 |
Structure conservation index | 0.84 |
SVM decision value | 1.74 |
SVM RNA-class probability | 0.974952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6740932 106 - 27905053 UUCAACGCUUUGGGCUCCUCUG--UGCUUUUGCUUUUG------------CCUUUGCCAUUGCCUCUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGC ......((...((((.....((--.((....((....)------------)....))))..))))..))...(((((((((((((..(((((.........)))))))))).)))))))) ( -27.70) >DroSec_CAF1 5712 113 - 1 UUCAACGCUUUGGGCUCCUCUGUGUGCUUUUGCUUUUGAGUU-------GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGC ..((((((....(((..(((.....((....))....)))..-------)))...)).))))..........(((((((((((((..(((((.........)))))))))).)))))))) ( -32.30) >DroSim_CAF1 10045 111 - 1 UUCAACGCUUUGGGCUCCUCUG--UGCUUUUGCUUUUGCCUU-------GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGC ..((((((...((((.......--.((....))....)))).-------).)))))................(((((((((((((..(((((.........)))))))))).)))))))) ( -28.20) >DroYak_CAF1 248 118 - 1 UUCAACGCUUUGGGCUCCUCGG--UGCUUUUGCUUUUGCUUUUGAUUUCGCUCUUGCUGUUGCCUUUGCGCUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGC .....(((...((((....(((--(((....))....((..........))....))))..))))..)))..(((((((((((((..(((((.........)))))))))).)))))))) ( -31.80) >consensus UUCAACGCUUUGGGCUCCUCUG__UGCUUUUGCUUUUGC_UU_______GCCGUUGCUGUUGCCUUUGCCUUGCUGCAGUGCUUUAAUAAAUAUUCAUUUGAUUUAAAAGCUGCUGCAGC ......((...((((..........((....))................((....))....))))..))...(((((((((((((..(((((.........)))))))))).)))))))) (-25.20 = -25.45 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:08 2006