Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,739,585 – 6,739,705 |
Length | 120 |
Max. P | 0.694127 |
Location | 6,739,585 – 6,739,705 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.44 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -22.30 |
Energy contribution | -22.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 1.00 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6739585 120 - 27905053 AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU ........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... ( -22.30) >DroSec_CAF1 4422 120 - 1 AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU ........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... ( -22.30) >DroSim_CAF1 8783 120 - 1 AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAGAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU ........((((.(((.....((........)).......((((.......))))))).))))..(((...(((((((.....).))))))....((((....))))...)))....... ( -22.40) >consensus AUAAUACCCUGCCGCAUAAAUCAUUAAAACUUGCCACAUUACGCAUACGCCGCGUUGCAGCAGCCAGCAUAAAGUGUCUAUAAAAACGCUUAAAAUGUGUGAACACAAAAGCUUCAAACU ........((((.(((.....((........)).......((((.......))))))).))))..(((...((((((........))))))....((((....))))...)))....... (-22.30 = -22.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:02 2006