Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,739,389 – 6,739,505 |
Length | 116 |
Max. P | 0.513566 |
Location | 6,739,389 – 6,739,505 |
---|---|
Length | 116 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.09 |
Mean single sequence MFE | -41.93 |
Consensus MFE | -30.84 |
Energy contribution | -31.40 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.09 |
Mean z-score | -2.34 |
Structure conservation index | 0.74 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6739389 116 + 27905053 CGCAGGGGGGGG--GGUAGGGGUGC--UGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAUCCAAAGUCUUCUCUGCUCCGCCUUUCCCUUCAUAAAG .(.((((((.((--((((((((.((--(...((..((((...(((((...((((........))))...)))))...))))..))..)))..)))))))))).))...)))).)...... ( -39.00) >DroSec_CAF1 4223 119 + 1 CGCGGGGUGGUGGCGAAAGGGGUGCUCUAGGGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCA-UCCCUUCAUAAAG ...((((((((((.(...((((....((...(((.((((...(((((...((((........))))...)))))...)))).)))..))....)))).).))))))-))))......... ( -40.80) >DroSim_CAF1 8584 119 + 1 CGCGGGGGGGCGGCGAGAGGGGUGCUCUGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCU-UCCCUUCAUAAAG ...((((((((((.((((((((.(((.(((.....((((...(((((...((((........))))...)))))...))))..))).)))))))))).).))))))-))))......... ( -46.00) >consensus CGCGGGGGGGCGGCGAAAGGGGUGCUCUGGAGGUAGGGUAAAAGUUUGCUGUGUGCAACAAAAUAUUGAAAAUUAAGACCCAGCCAAAGUCUUCUCUGCACCGCCU_UCCCUUCAUAAAG .(.((((((((((.(...((((....((...(((.((((...(((((...((((........))))...)))))...)))).)))..))....)))).).))))))..)))).)...... (-30.84 = -31.40 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:01 2006