Locus 2381

Sequence ID 3R_DroMel_CAF1
Location 6,738,950 – 6,739,069
Length 119
Max. P 0.749920
window3846

overview

Window 6

Location 6,738,950 – 6,739,069
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -33.67
Consensus MFE -32.47
Energy contribution -32.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.77
Structure conservation index 0.96
SVM decision value 0.47
SVM RNA-class probability 0.749920
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6738950 119 + 27905053
AGAUCCGCUGCACCUUUCUUCUUGGCUUUCUU-GGGGCUGGCAAAUAUUUUUGUCUGCUCGCAAAAUAUUUAACACAAUGGCCGUUAAUGGCUGUGGUCAGCUAGGGAUUUUCCUGCAUU
........((((......(((((((((..(((-(((((.((((((....)))))).)))).))).........((((...((((....)))))))))..)))))))))......)))).. ( -33.50)
>DroSec_CAF1 3794 120 + 1
AGAUCCGCUGCACCUUUCUUCUUGGCUUUCUUUCGGGCUGGCAAAUAUUUUUGUCUGCUCGCAAAAUAUUUAACACAAUGGCCGUUAAUGGCUGUGGUCAGCUAGGGAUUUUCCUGCAUU
........((((......(((((((((..(((((((((.((((((....)))))).))))).)))........((((...((((....)))))))))..)))))))))......)))).. ( -33.80)
>DroSim_CAF1 8150 120 + 1
AGAUCCGCUGCACCUUUCUUCUUGGCUUUCUUUCGGGCUGGCAAAUAUUUUUGUCUGCUCGCAAAAUAUUUAACACAAUGGCCGUUAAUGGCUGUGGUCAGCUAGGGAUUUUCCUGCACU
........((((......(((((((((..(((((((((.((((((....)))))).))))).)))........((((...((((....)))))))))..)))))))))......)))).. ( -33.70)
>consensus
AGAUCCGCUGCACCUUUCUUCUUGGCUUUCUUUCGGGCUGGCAAAUAUUUUUGUCUGCUCGCAAAAUAUUUAACACAAUGGCCGUUAAUGGCUGUGGUCAGCUAGGGAUUUUCCUGCAUU
........((((......(((((((((..(....((((.((((((....)))))).)))).............((((...((((....)))))))))..)))))))))......)))).. (-32.47 = -32.47 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:00 2006