Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,738,324 – 6,738,444 |
Length | 120 |
Max. P | 0.750157 |
Location | 6,738,324 – 6,738,444 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -23.20 |
Consensus MFE | -22.55 |
Energy contribution | -22.33 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.74 |
Structure conservation index | 0.97 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6738324 120 + 27905053 UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGGAAGCAAACAAUGC ...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). ( -23.90) >DroSec_CAF1 3158 120 + 1 UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAAUAAUGC ...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).))))))...((((((.......)))))).. ( -23.10) >DroSim_CAF1 7513 120 + 1 UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAACAAUGC ...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). ( -22.60) >consensus UUCGCAUGAUUUAUCGCUUGGAAUUCACUUCCCACUAUCUUCUUCCCUUUCUGCAGAUUCCGAUUGCAAUUUGCUUUGGCCAUGCAUAAUUCAUGCAUAAUUAUUGCAAGCAAACAAUGC ...((((((.((((.((.(((...............((((.(..........).)))).((((..((.....)).))))))).)))))).)))))).....(((((........))))). (-22.55 = -22.33 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:52 2006