Locus 2377

Sequence ID 3R_DroMel_CAF1
Location 6,737,362 – 6,737,482
Length 120
Max. P 0.546124
window3836

overview

Window 6

Location 6,737,362 – 6,737,482
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.89
Mean single sequence MFE -24.88
Consensus MFE -21.75
Energy contribution -21.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.87
SVM decision value 0.02
SVM RNA-class probability 0.546124
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6737362 120 + 27905053
AAUAAUAGCUGAGAGCUUAAAAUUAAAAUUGGUUUAUUGGGUUCUUCAAUUACAAGAGCUUGUAGCCCGAUUUAAGCCCACUCAGAAUAAAAUUAUGCUUACACAUGUAAUUCAAAGCAA
........(((((.((((((.......(((((.((((.((((((((.......)))))))))))).)))))))))))...)))))..........(((((..............))))). ( -23.55)
>DroSec_CAF1 2201 119 + 1
AAUAAUAGCUGAGAGCUUAAAAUUAAAAUUGGUUUAUUGGGUUCUUCAAUUACAAGAGCUUGUAGC-CGAUUUAAGCCCCCUCAGAAUAAAAUUAUGCUUACACAUGUAAUUCAAAGCAA
........(((((.((((((.......(((((((...(((((((((.......))))))))).)))-))))))))))...)))))..........(((((..............))))). ( -25.55)
>DroSim_CAF1 6538 119 + 1
AAUAAUAGCUGAGAGCUUAAAAUUAAAAUUGGUUUAUUGGGUUCUUCAAUUACAAGAGCUUGUAGC-CGAUUUAAGCCCACUCAGAAUAAAAUUAUGCUUACACAUGUAAUUCAAAGCAA
........(((((.((((((.......(((((((...(((((((((.......))))))))).)))-))))))))))...)))))..........(((((..............))))). ( -25.55)
>consensus
AAUAAUAGCUGAGAGCUUAAAAUUAAAAUUGGUUUAUUGGGUUCUUCAAUUACAAGAGCUUGUAGC_CGAUUUAAGCCCACUCAGAAUAAAAUUAUGCUUACACAUGUAAUUCAAAGCAA
........(((((.((((((.......(((((((...(((((((((.......))))))))).))).))))))))))...)))))..........(((((..............))))). (-21.75 = -21.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:50 2006