Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,736,612 – 6,736,731 |
Length | 119 |
Max. P | 0.526497 |
Location | 6,736,612 – 6,736,731 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.68 |
Mean single sequence MFE | -31.63 |
Consensus MFE | -25.35 |
Energy contribution | -25.02 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.08 |
Mean z-score | -1.94 |
Structure conservation index | 0.80 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6736612 119 - 27905053 ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGCCUUGUGUGUGUGUUUGAUUUCCAUGCGAGAGGGUAUUAAAUACAUAUUUGAAGAUCG-GCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((....((((....(((((((((((((.(((........))).)))))))))))))..(.....))-)))))))).))))))))).....)))). ( -35.90) >DroSec_CAF1 1540 109 - 1 ACAAAGAGCGAUUUAUUUGAACUUUUUCCCCUGGCUU-----UGUGUGUGAUUUCCAUGCGA--GGGCAUUAAA----UAUUUGAAGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....(((((((...........((.(((-----((((((.(....))))))))--)).)))))))----))(((((...(((.(((.....))).)))...))))))))). ( -27.40) >DroSim_CAF1 5815 109 - 1 ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGGCUU-----UGUGUGUGAUUUCCAUGCGA--GGGCAUUAAA----UAUUUGAGGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((((((((.(((-----((((((.(....))))))))--)).)).....----.....)))))........)))).))))))))).....)))). ( -31.60) >consensus ACAAAGAGCGAUUUAUUCGAACUUUUUCCUCUGGCUU_____UGUGUGUGAUUUCCAUGCGA__GGGCAUUAAA____UAUUUGAAGAUCGCGCAAAAAAUGUUCGAGUGUCAAGGCUCA .....((((....((((((((((((((.................((((((((((...(((......)))(((((......)))))))))))))))))))).))))))))).....)))). (-25.35 = -25.02 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006