Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,736,273 – 6,736,378 |
Length | 105 |
Max. P | 0.660734 |
Location | 6,736,273 – 6,736,378 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.79 |
Mean single sequence MFE | -24.55 |
Consensus MFE | -20.17 |
Energy contribution | -20.07 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.07 |
Mean z-score | -1.75 |
Structure conservation index | 0.82 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6736273 105 - 27905053 --ACUUACCC-CAAAAGUGGAAAAUGCAUUCCUGUA------------AAAUGUCACAGCUUUGGUUGGAGUAUUCCGCUCACACAAAAGACAGCCAGCUGCUGGUAGAUUAAUGCAUUU --.......(-((....))).(((((((((...((.------------...(..(((((((..(((((((((.....)))).(......).)))))))))).))..).)).))))))))) ( -25.20) >DroSec_CAF1 1189 116 - 1 UCACUUACCCUCAAAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU----CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU ((((((........)))))).((((((((...((......))(((((....((((........----.((((.....))))........))))(((((...)))))))))).)))))))) ( -25.53) >DroSim_CAF1 5495 113 - 1 UCAUUUCCCC---AAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU----CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU ((((((....---.)))))).((((((((...((......))(((((....((((........----.((((.....))))........))))(((((...)))))))))).)))))))) ( -22.93) >consensus UCACUUACCC_CAAAAGUGGAAAAUGCAUACCUGUAAAUUCAAAUCUAAAAUGUCACAGCUUU____CGAGUAUUCUGCUCACACAAAAGACAGCCAGCUGCUGGCAGAUUAAUGCAUUU .(((((........)))))..((((((((.............................(((((.....((((.....)))).....)))).).(((((...)))))......)))))))) (-20.17 = -20.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:45 2006