Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,735,794 – 6,735,914 |
Length | 120 |
Max. P | 0.962376 |
Location | 6,735,794 – 6,735,914 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.54 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -36.42 |
Energy contribution | -35.10 |
Covariance contribution | -1.32 |
Combinations/Pair | 1.16 |
Mean z-score | -2.22 |
Structure conservation index | 0.99 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6735794 120 - 27905053 UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUUCAGCUGCAAUCGAAUGCUGCAUUUGAGCGUAUAUAUAUUUAUAUGUAUAUCGACAU .....(((((....)))))(((((((..(((((.(((((((((((...((((......)))).)))))))))..))...)))))...)))))))((((((((....))))))))...... ( -34.00) >DroSec_CAF1 727 119 - 1 UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU-UGAGCGUAUGUAUAUUUAUAUGUAUACCGACAU .....(((((....)))))(((((((..(((((.(.(((((((((...((((......)))).)))))))))...)...)))))..-)))))))..((((((......))))))...... ( -35.50) >DroSim_CAF1 5055 119 - 1 UAAUCGUUGCUCAGGCGACAUAUUUACGGCGGUGCGUGCAGCUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU-UGAGCGUAUGUAUAUUUAUAUGCAUACCGACAU ...(((..((((((....).......(((((.....(((((((((...((((......)))).)))))))))......)))))...-)))))(((((((((....))))))))))))... ( -40.60) >consensus UAAUCGUUGCUCAGGCGACAUGUUUACGGCGGUGCGUGCAGUUGGCUUGAUGCAUGUUUAUUUCCAGCUGCAAUUGAAUGCUGCAU_UGAGCGUAUGUAUAUUUAUAUGUAUACCGACAU .....(((((((((....).........(((((.(((((((((((...((((......)))).)))))))))..))...)))))...)))))(((((((((....))))))))).))).. (-36.42 = -35.10 + -1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:44 2006