Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,730,016 – 6,730,108 |
Length | 92 |
Max. P | 0.512990 |
Location | 6,730,016 – 6,730,108 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 71.73 |
Mean single sequence MFE | -21.62 |
Consensus MFE | -14.50 |
Energy contribution | -13.50 |
Covariance contribution | -1.00 |
Combinations/Pair | 1.39 |
Mean z-score | -1.13 |
Structure conservation index | 0.67 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6730016 92 - 27905053 UGCCGCG----------------------------CCCCCUUCAACUCGGAUACGCCCGCCUAUAAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAUUUCA ((((((.----------------------------.......((((((((......))........(((.....)))....)))))).....(((....))).......))))))..... ( -26.90) >DroSec_CAF1 13318 92 - 1 UGCCACG----------------------------CCCCCUUCCACUAGGAUACGCCCGCCUAUAAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA ((((..(----------------------------(.....(((....)))...))..((......(((.....)))..(((.((((.....(((....))))))))))))))))..... ( -23.20) >DroEre_CAF1 15972 90 - 1 GGCCACG----------------------------CCCCCUUCCACUCCGAUACGCCCGCCU--AAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAUUUCA (((...)----------------------------))............((...(((.((..--..(((.....)))..(((.((((.....(((....)))))))))))))))...)). ( -21.40) >DroYak_CAF1 14782 90 - 1 UGCCACG----------------------------CCCCUUUUCACUCGGAUACGCCCGCCU--AAGCCUACACGGCAAUGGAGUUCCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA ((((...----------------------------............(((......)))...--..((......((((((((.((.......)).))))))))......))))))..... ( -20.00) >DroAna_CAF1 14150 118 - 1 GAUCGUUCCCACCUUCUCCACCCCCAUUCCGCAAUCUCCUUACCUCACCGCCACUCCCACUU--CAGUCUAUUCAAUGAUGAAGCUGCAUAUGCAUUAUUAGCAGCCCGGAGGCAAUGUA .................................................(((..(((...((--((.((........))))))(((((.((........)))))))..))))))...... ( -16.60) >consensus UGCCACG____________________________CCCCCUUCCACUCGGAUACGCCCGCCU__AAGCCUACACGGCAAUGGAGUUGCAUAUGCAUUAUUGCCAACCCAGCGGCAAUUCA .................................................((...((((((......))......((((((((.((.......)).))))))))......).)))...)). (-14.50 = -13.50 + -1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:39 2006