Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 939,389 – 939,509 |
Length | 120 |
Max. P | 0.500000 |
Location | 939,389 – 939,509 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.95 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -25.58 |
Energy contribution | -24.37 |
Covariance contribution | -1.21 |
Combinations/Pair | 1.21 |
Mean z-score | -1.63 |
Structure conservation index | 0.74 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 939389 120 - 27905053 UCAGCAGUGCAGGGUAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCAAUGGAAAUAUUAGAAUGGCACUCUGGGGGCUCUUGAGCAUAUGGACAUGUGCUAUAUGCUAUAUGCUCUAU .(((.(((((.(((...........)))(((((((...(.((.......)).)..)))))))....))))))))(((((.....(((((((((.(....))))))))))....))))).. ( -36.90) >DroSec_CAF1 28460 109 - 1 UCAAUAGUACUGGGAAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCUAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU-----------CCAUAUGCUAUAUCCUCUAU ...((((((...(((..(((..(.(((((.(((((.(..((((((((....)).))))))....).)))))..))))).)..)))...)-----------))...))))))......... ( -32.50) >DroSim_CAF1 34416 109 - 1 UCAAUAGUACUGGGAAAUCGGAAGCCCCCCAGUGUGAGCGGUAUUCCCAAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU-----------CCAUAUGCUAUAUGGUCUAU (((((((((...(((..(((..((((((..(((((.(..((((((((....)).))))))....).)))))..)))).))..)))...)-----------))...)))))).)))..... ( -33.80) >consensus UCAAUAGUACUGGGAAAUCGGAAAUCCCCUAGUGUGAGCGGUAUUCCCAAUGGCAAUAUCAGAAUGGCACUCUGGGGACUCUUGAGUGU___________CCAUAUGCUAUAUGCUCUAU ...((((((...((............((((((.(((..(((((((((....)).)))))).).....))).))))))(((....))).............))...))))))......... (-25.58 = -24.37 + -1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:26 2006