Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,728,350 – 6,728,460 |
Length | 110 |
Max. P | 0.820945 |
Location | 6,728,350 – 6,728,460 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -22.33 |
Consensus MFE | -13.68 |
Energy contribution | -13.12 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.26 |
Mean z-score | -1.83 |
Structure conservation index | 0.61 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820945 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6728350 110 - 27905053 AGAACAAAAAAAAAAAGUAAGAAAUUCAAGGAAUUGAACGAUUUUUUUUUUCCAUUCAUCAUCGCAAAAUUUGCUUGAUGAAGCCAGCGGCA------UAAGUCGUUACAAGCAGU---- .......(((((((((((....(((((...))))).....)))))))))))...(((((((..(((.....))).)))))))((.((((((.------...))))))....))...---- ( -22.60) >DroSec_CAF1 11644 100 - 1 AGAACAAAAAA------------UUCUAAGAAAUUGAACGAUUUU--UUUUCCAUUCAUCAUCGCAAAAUUUGCUUGAUGAAGCCAGCGGCA------UAAGUCGUUUUAGGUGCUUUAU .(((.((((((------------((.(((....)))...))))))--)))))..(((((((..(((.....))).)))))))(((((((((.------...))))))...)))....... ( -20.90) >DroEre_CAF1 14343 107 - 1 AGAACAAAAAA-------------GCCAAGAAAUUGAACGAAUUUUUUGUUCCAUUCAUCAUCGCAAAAUUUGCUUGAUGAAGCCAGCGGCAUGAUGAACAGUCGUUUUAGCUGCUCCAU .((((((((((-------------..(((....)))......))))))))))..(((((((..(((.....))).)))))))...((((((..(((((....)))))...)))))).... ( -30.20) >DroYak_CAF1 13045 100 - 1 AGAACAAAAAA-------------GCCAAGAAAUUGGACGAAUUUUUU-UCCCAUUCAUCAUCGCAAAAUUUGCUUGAUGAAGUCAGCGGCA------ACAGUCGUUUUAGCUGCUCCAU .(((.((((..-------------(((((....)))).)...)))).)-))...(((((((..(((.....))).)))))))...(((((((------((....)))...)))))).... ( -23.70) >DroAna_CAF1 12516 106 - 1 AAAACAAAAAAAAAA------AAACCCAAGAAAUUGAAAGAAUAUAU--UUUCAUUCAUCAUCGCAAAAUUUACUUGAUGAAGCCGGCGGCC------AUAGACGAUUUAGGUGCUUUAU ............(((------..(((....((((((...(((.....--.))).(((((((..............)))))))(((...))).------.....)))))).)))..))).. ( -14.24) >consensus AGAACAAAAAA_____________GCCAAGAAAUUGAACGAAUUUUUU_UUCCAUUCAUCAUCGCAAAAUUUGCUUGAUGAAGCCAGCGGCA______AAAGUCGUUUUAGGUGCUCCAU ........................(((((....)))(((((.............(((((((..(((.....))).)))))))(((...)))...........)))))...))........ (-13.68 = -13.12 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006