Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,727,756 – 6,727,869 |
Length | 113 |
Max. P | 0.699834 |
Location | 6,727,756 – 6,727,869 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.37 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -18.64 |
Energy contribution | -18.77 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.13 |
Mean z-score | -1.20 |
Structure conservation index | 0.85 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699834 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6727756 113 - 27905053 CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA--GCUACCAAUCCCCCCCUUCCUUCAAUCGCUGUAGUCUACCCCCAUGGCAACCCAGAACCCCU---ACCCCCCUCC--C ..((((((....)).((((.((((((......(((((((.--............................))))))).........)))))).))))..)))).---..........--. ( -23.51) >DroSec_CAF1 10976 114 - 1 CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA--GCUCCCAACCCCCCCU----UUCAAUCGCUGUAGUCUACCCCCAUGGCAACCUAAAACCCCUCUGACUCCCCUCCCCC ..((((((....))...((.((((((......(((((((.--................----........))))))).........)))))))).....))))................. ( -18.57) >DroEre_CAF1 13744 95 - 1 CUGGGGCGAUAACGACUGGCUUGUCACUCUCCGCUGCAGA--UCCACCAGCCCCCC------CACAACCACUGUAGUCUACCCCCAUGGCAACCCAGCCCCCU----------------- ..((((((....)).((((.((((((......(((((((.--..............------........))))))).........)))))).)))).)))).----------------- ( -22.96) >DroYak_CAF1 12418 97 - 1 CUGGGGCGAUAACGACUGGCUUGUCACUCUCCGCUGCAGAGAACGCCCCUUCCCCC------UACAACCACCAUAGUCUACCCCCAUGGCAACCCAGCCCCCC----------------- ..((((((.....(((......))).((((.......))))..)))))).......------.........................(((......)))....----------------- ( -23.10) >consensus CUGGGGCGAUAACGACUGGCUUGUCACUCUCCACUGCAGA__GCUACCAACCCCCC______UACAACCACUGUAGUCUACCCCCAUGGCAACCCAGAACCCC_________________ ..((((((....)).((((.((((((......(((((((...............................))))))).........)))))).))))..))))................. (-18.64 = -18.77 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:36 2006