Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,726,886 – 6,726,993 |
Length | 107 |
Max. P | 0.668452 |
Location | 6,726,886 – 6,726,993 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -28.16 |
Consensus MFE | -22.66 |
Energy contribution | -23.10 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -1.49 |
Structure conservation index | 0.80 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668452 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6726886 107 + 27905053 ACA-------------GUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA ...-------------....(((...))).(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -23.80) >DroSec_CAF1 10106 120 + 1 ACAGUGCUGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA ....((((((((....)))......)))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -28.70) >DroEre_CAF1 12826 120 + 1 ACAGUGCCGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGUCAUGACAAUGCCGAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA ....((((((((....)))......)))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -30.60) >DroYak_CAF1 11511 120 + 1 ACAGUGCCCGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCGAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA ....((((((((....)....)))..))))(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... ( -29.40) >DroAna_CAF1 11192 120 + 1 ACAGUGCUGGACGUCAGUUAACCAACAGGAGAAGUUGAUUAGUCUACCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAACUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA .(((((...((.(((((((...((((.......))))....(((......)))..(((((.(((..........))).)).))))))))))))...)))))((((((....))))))... ( -28.30) >consensus ACAGUGCCGGGCGAAAGUUAACCGACGGUAGCAGUUGAUUAGUCUGCCAUGACAAUGCCAAGGAUUUUUCACAUUCCAUGUGCAAAUUGAUUCAAUUAUUGGCAUUUAAUUAAAUGCAAA .........(((....)))...........(((.((((((((((......)))(((((((((((((((((((((...))))).)))..))))).....))))))))))))))).)))... (-22.66 = -23.10 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:35 2006