Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,726,742 – 6,726,852 |
Length | 110 |
Max. P | 0.992583 |
Location | 6,726,742 – 6,726,852 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.80 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -18.90 |
Energy contribution | -19.98 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.26 |
Mean z-score | -2.46 |
Structure conservation index | 0.48 |
SVM decision value | 2.34 |
SVM RNA-class probability | 0.992583 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6726742 110 + 27905053 GUAUGCCAGGCA--GGGACAAAAUACUUUUCGACCAUCGAAGCCAGUGGGUCCAAGGACCUGUCGGCCACAUUCCUGUGGUUGUUGCCACUCC--------AAAGUGUCCUUGCUGGCCA ....(((((.((--((((((........((((.....))))(((.(..((((....))))..).))).........(((((....)))))...--------....))))))))))))).. ( -45.70) >DroSec_CAF1 9962 110 + 1 GUAUGCCAGGCA--GGGACAAAAUACUUUUCGACCAUCCAAAGCAGUGGGACCAAGGACCUGUCGGCCACAUUCCUGUGGUUGUUGCCACUGC--------AAAGUGUCCUUGCCGGCCA ....(((.((((--((((((...........(......)...((((((((((.........)))(((((((....)))))))....)))))))--------....))))))))))))).. ( -44.20) >DroEre_CAF1 12681 111 + 1 GUAUGCCAGGCA--GGGACAAAAUACUUUUCGACCAACCAAACCAGUGGGUCCAAGACCCAGUCGGCCACAUUCCUGUGGCUGUUGCUACUCCA-------AAAGUGUCCUUGCCGGCCA ....(((.((((--(((((.....((((((.((.((((........((((((...))))))...(((((((....)))))))))))....)).)-------))))))))))))))))).. ( -45.20) >DroYak_CAF1 11351 120 + 1 GUAUGCCAGGCAGAGGGAAAAAAUACUUUUCGACCAACGAAACCAGUGGGUCCAAGGCCCAGUCGGCCACAUUCCUGUGGUUGUUGCCACUCUACCACUCCAAAGUGUCCUUGCCGGGCA ...((((.((((((((((.....(((((((((.....)))))..))))..)))..(((.....((((((((....))))))))..))).))))..((((....)))).....))).)))) ( -40.70) >DroAna_CAF1 11069 93 + 1 GUAUGCUGGGCU--AUGACAAAAUCA---UCGUACCCCUGAAGA----AGUCCAAGAGCUU-CUGGCCACAUUCUUGCGGUGGUUGCCGA-----------------UCCUUCUCCGGUA .......(((.(--((((........---))))).)))...(((----(((......))))-))((((((.........))))))((((.-----------------........)))). ( -22.70) >consensus GUAUGCCAGGCA__GGGACAAAAUACUUUUCGACCAACCAAACCAGUGGGUCCAAGGACCUGUCGGCCACAUUCCUGUGGUUGUUGCCACUCC________AAAGUGUCCUUGCCGGCCA ....(((.((((..((((((............................((........))...((((((((....))))))))......................))))))))))))).. (-18.90 = -19.98 + 1.08)
Location | 6,726,742 – 6,726,852 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.80 |
Mean single sequence MFE | -39.90 |
Consensus MFE | -15.49 |
Energy contribution | -17.38 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.22 |
Mean z-score | -1.80 |
Structure conservation index | 0.39 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6726742 110 - 27905053 UGGCCAGCAAGGACACUUU--------GGAGUGGCAACAACCACAGGAAUGUGGCCGACAGGUCCUUGGACCCACUGGCUUCGAUGGUCGAAAAGUAUUUUGUCCC--UGCCUGGCAUAC ..(((((((.(((((((.(--------((..((....)).))).))(((((..((((...((((....))))...))))((((.....))))...)))))))))).--)).))))).... ( -39.80) >DroSec_CAF1 9962 110 - 1 UGGCCGGCAAGGACACUUU--------GCAGUGGCAACAACCACAGGAAUGUGGCCGACAGGUCCUUGGUCCCACUGCUUUGGAUGGUCGAAAAGUAUUUUGUCCC--UGCCUGGCAUAC ..(((((((.(((((...(--------((..((....)).(((((....))))).((((..((((..(((......)))..)))).))))....)))...))))).--)))).))).... ( -43.20) >DroEre_CAF1 12681 111 - 1 UGGCCGGCAAGGACACUUU-------UGGAGUAGCAACAGCCACAGGAAUGUGGCCGACUGGGUCUUGGACCCACUGGUUUGGUUGGUCGAAAAGUAUUUUGUCCC--UGCCUGGCAUAC ..(((((((.(((((((((-------(.((.((((..(.((((((....)))))).)..((((((...))))))........)))).)).)))))).....)))).--)))).))).... ( -47.60) >DroYak_CAF1 11351 120 - 1 UGCCCGGCAAGGACACUUUGGAGUGGUAGAGUGGCAACAACCACAGGAAUGUGGCCGACUGGGCCUUGGACCCACUGGUUUCGUUGGUCGAAAAGUAUUUUUUCCCUCUGCCUGGCAUAC ((((.((((((((((.(((...(((((....((....))))))).))).)))(((((((..((((.((....))..))))..)))))))((((((...))))))))).)))).))))... ( -43.30) >DroAna_CAF1 11069 93 - 1 UACCGGAGAAGGA-----------------UCGGCAACCACCGCAAGAAUGUGGCCAG-AAGCUCUUGGACU----UCUUCAGGGGUACGA---UGAUUUUGUCAU--AGCCCAGCAUAC ....(((((((..-----------------..(....)..(((((....)))))((((-......)))).))----))))).(((.((.((---(......))).)--).)))....... ( -25.60) >consensus UGGCCGGCAAGGACACUUU________GGAGUGGCAACAACCACAGGAAUGUGGCCGACAGGGCCUUGGACCCACUGGUUUCGAUGGUCGAAAAGUAUUUUGUCCC__UGCCUGGCAUAC ..(((((((.(((((..............(((((......(((((....)))))((((.......))))..)))))......(.....)...........)))))...)).))))).... (-15.49 = -17.38 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:34 2006