| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,724,013 – 6,724,156 |
| Length | 143 |
| Max. P | 0.781891 |
| Location | 6,724,013 – 6,724,117 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.63 |
| Mean single sequence MFE | -25.44 |
| Consensus MFE | -10.50 |
| Energy contribution | -10.98 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780390 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6724013 104 - 27905053 CAAACUUCAGCUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAC-AAAAGCUUAAUAAAGCGGCCAG--------CUAAAAAAAAAAAUACGUA--CACUUGAAUGUGGCAG----- ......................(((((((((((((((.((((.....-....))))......))))))))--------)).............((..--....))...)))))..----- ( -25.70) >DroSim_CAF1 8426 101 - 1 CAAACUUCAGCUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA-AAAAGCUUAAUAAAGCGGCCAG--------CUAAAA---AAAAUACGUA--CACUUGGAUGUGGCAG----- ......................(((((((((((((((.((((.....-....))))......))))))))--------))....---......((..--....))...)))))..----- ( -25.90) >DroEre_CAF1 8753 99 - 1 CAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCUGGCAACAA-AAACGCUUAAUAAAGCGGCCAG--------CUAAAA----AAACACUUA--UACUUGGAUGGGGGU------ .........((((((...(((((....(((((((....((....)).-...(((((....))))))))))--------))....----.........--....)))))))))))------ ( -28.30) >DroYak_CAF1 8802 107 - 1 CAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA-AAAAGCUUAAUAAAGCGGCCAG--------CUAAAA----AAAUACUUACUUACUUGGAUGGGGCAAGGAAU ...........((((....((((((..((((((((((.((((.....-....))))......))))))))--------))....----.........(......)))))))...)))).. ( -30.30) >DroAna_CAF1 8169 105 - 1 CAAACC-AAACUCCUCGUAUCCGUCACAGCUGGCCCCCAAGCAACAAAAAAAGCUUAAUGAAGCGACCAAGUUCGCAACCAAAA---AAAAUAUGUA--UUUUGGG----GACUG----- ......-...............((((....))))((((((((..........))))......((((......))))........---..........--....)))----)....----- ( -17.00) >consensus CAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA_AAAAGCUUAAUAAAGCGGCCAG________CUAAAA___AAAAUACGUA__UACUUGGAUGGGGCAG_____ .............................((((((((.((((..........))))......)))))))).................................................. (-10.50 = -10.98 + 0.48)
| Location | 6,724,046 – 6,724,156 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.45 |
| Mean single sequence MFE | -25.02 |
| Consensus MFE | -14.08 |
| Energy contribution | -14.32 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.781891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6724046 110 - 27905053 UCUUCCAGGGAAUCCCCGAACAAGGACCCCA-AACGGAAACAAACUUCAGCUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAC-AAAAGCUUAAUAAAGCGGCCAG--------CU .......(((..(((........))).))).-.(((((.......(((........))))))))...((((((((((.((((.....-....))))......))))))))--------)) ( -29.21) >DroSim_CAF1 8456 110 - 1 UCUUCCAGGGAAUCCCCGCACACGGACCCCA-AACGAAAACAAACUUCAGCUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA-AAAAGCUUAAUAAAGCGGCCAG--------CU .......(((..(((........))).))).-...............(((((...((....))....)))))((((((.(....)..-....((((....)))))).)))--------). ( -26.60) >DroEre_CAF1 8781 111 - 1 UCUUCCAGGGAAUCCCUGCACAAGGACCCCAAAAAAAAAACAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCUGGCAACAA-AAACGCUUAAUAAAGCGGCCAG--------CU .....(((((...)))))..(.((((.........................)))).)..........(((((((....((....)).-...(((((....))))))))))--------)) ( -26.91) >DroYak_CAF1 8838 111 - 1 CCUUCCAGGGAAUCCCUGCACAAGGACCCCUAAACGAAAACAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA-AAAAGCUUAAUAAAGCGGCCAG--------CU ((((.(((((...)))))...))))..........................................((((((((((.((((.....-....))))......))))))))--------)) ( -28.00) >DroAna_CAF1 8195 103 - 1 CCUUUCUGGGAAUUCCCUCA----------------AAAACAAACC-AAACUCCUCGUAUCCGUCACAGCUGGCCCCCAAGCAACAAAAAAAGCUUAAUGAAGCGACCAAGUUCGCAACC .......(((....)))...----------------..........-.......((((....((((....))))....((((..........)))).)))).((((......)))).... ( -14.40) >consensus UCUUCCAGGGAAUCCCCGCACAAGGACCCCA_AACGAAAACAAACUUCAACUCCUCGAAUCCGUCACAGCUGGCUGCCAGGCAACAA_AAAAGCUUAAUAAAGCGGCCAG________CU .......(((....)))....................................................((((((((.((((..........))))......)))))))).......... (-14.08 = -14.32 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:25 2006