Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,723,815 – 6,723,910 |
Length | 95 |
Max. P | 0.599168 |
Location | 6,723,815 – 6,723,910 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 85.02 |
Mean single sequence MFE | -22.15 |
Consensus MFE | -16.69 |
Energy contribution | -16.29 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.25 |
Mean z-score | -1.62 |
Structure conservation index | 0.75 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6723815 95 + 27905053 AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGUCCGACGUGGUCACAGUGGGUUCCUUUCUCCACUUUCCAACUCCAACUCGAAACCCACAUCC .((((.((....((((((....))))))..))((..((..(((....((((((........))))))..)))..))..))..))))......... ( -20.30) >DroSec_CAF1 8314 95 + 1 AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGCCCGACGUGGUCACAGUGGGUUCCUUUCUCCCCUUUCCACCUCCAACUCGAAACCCACAUCC .((((.(((...((((((....))))))....))).((.((((....((.(((.........)))))..)))).))......))))......... ( -23.00) >DroSim_CAF1 8228 95 + 1 AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGCCCGAGGUGGUCACAGUGGGUUCCCUUCUCCCCUUUCCAACUCCAACUCGAAACCCACAUCC (((((.(((...((((((....))))))....))).))))).......(((((((.............................))))))).... ( -23.65) >DroEre_CAF1 8550 88 + 1 AUUUCUGGCUUUGGUCACAUGUGUGGCUCUCCGUCCGUCGUGGUCACAGUGGGUUCCAUUUUCCC-CCUCCAAC-UC-----CAAGCCCACAUCC ......(((((((..((((((..(((....)))..))).)))..)).((.(((.........)))-.)).....-..-----.)))))....... ( -20.90) >DroYak_CAF1 8594 90 + 1 AUUUCUGGCUUUGGUCACAUGUGUGGCUCUCCGUCCGUCGUGGUCACAGUGGGUUCCAUU---CC-AUUCCAAC-CCACAUCCUCAUCCUCGUCC ......(((..((..((((((..(((....)))..))).)))..))..(((((((.....---..-.....)))-))))............))). ( -22.90) >consensus AUUUCUGGCUCUGGUCACAUGUGUGACUCUCCGUCCGACGUGGUCACAGUGGGUUCCAUUCUCCCCUUUCCAACUCCAACUCGAAACCCACAUCC ......(((...((((((....))))))....))).............(((((((.............................))))))).... (-16.69 = -16.29 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:24 2006