Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 932,901 – 932,994 |
Length | 93 |
Max. P | 0.837668 |
Location | 932,901 – 932,994 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -25.49 |
Consensus MFE | -15.33 |
Energy contribution | -15.85 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.12 |
Mean z-score | -2.07 |
Structure conservation index | 0.60 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837668 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 932901 93 + 27905053 AACUAGGCAAACACAAACAGGGGCUACGAAAGCCCAACUAAGUUGCCGAAGCUACCGAUACCCUGGAGUUUCUAAGGCAAAG-----ACAGCCUAUUU ...(((((............(((((.....))))).......(((((((((((.(((......)))))))))...)))))..-----...)))))... ( -30.20) >DroSec_CAF1 21859 98 + 1 AACUAGGCAAACACAAACAGGGGCUACGAAAGGCCAACUAAGUUGCCGAAGCUACUGAUACCCUGGGGUUUCUAAGGCAAAGACUUGACAGCUUAUUU .....(((((...........((((......)))).......))))).(((((...((.(((....))).))((((.......))))..))))).... ( -22.67) >DroSim_CAF1 27856 98 + 1 AACUAGGCAAACACAAACAGGGGCUACAAAAGGCCAACUAAGUUGCCGAAGCUACUGAUACCCUGGGGUUUCUAAGGCAAAGACUUGACAGCCUAUUU ...(((((.............((((......))))...((((((......(((...((.(((....))).))...)))...))))))...)))))... ( -24.80) >DroEre_CAF1 22726 81 + 1 AACUAGGCAAACACAAACAGCGGCUGGG-AAGGCCAACUAAGUUGCCAAAGCAACCGAUACCUUGGGGUUUUCUCGGCAAAG---------------- ......................((((((-((((((.......((((....))))((((....))))))))))))))))....---------------- ( -24.00) >DroYak_CAF1 41988 82 + 1 AACUAGGCAAACACAUGCAGGGGCUAGCAAAGGCCAACUAAGUUGCCGAAGUUACCCAUACCCUGGGGUUUUCUCGGCAAAG---------------- ...((((((......)))...((((......))))..)))..(((((((.(..((((........))))..).)))))))..---------------- ( -25.80) >consensus AACUAGGCAAACACAAACAGGGGCUACGAAAGGCCAACUAAGUUGCCGAAGCUACCGAUACCCUGGGGUUUCUAAGGCAAAG_____ACAGC_UAUUU .....(((((...........((((......)))).......)))))...(((...((.(((....))).))...))).................... (-15.33 = -15.85 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:26 2006