Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,721,812 – 6,721,929 |
Length | 117 |
Max. P | 0.933798 |
Location | 6,721,812 – 6,721,929 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.36 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -24.30 |
Energy contribution | -24.72 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.16 |
Mean z-score | -1.89 |
Structure conservation index | 0.90 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933798 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6721812 117 + 27905053 AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGGUUCUUCGAAGACGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA---A .(((.....(((((.((((.....((((.....))))..(((...(((((((((((......)))))))))))...))).....)))).)))))...))).((((......)))).---. ( -29.20) >DroSec_CAF1 6231 117 + 1 AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGGUUCUUCGAAGAUGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA---A .(((.....(((((.((((.....((((.....))))..(((...(((((((((((......)))))))))))...))).....)))).)))))...))).((((......)))).---. ( -29.20) >DroSim_CAF1 6201 117 + 1 AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGGUUCUUCGAAGAUGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA---A .(((.....(((((.((((.....((((.....))))..(((...(((((((((((......)))))))))))...))).....)))).)))))...))).((((......)))).---. ( -29.20) >DroEre_CAF1 6401 117 + 1 AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGGCUCUUCGAAGACGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA---A .(((.....(((((.((((.....((((.....))))..(((...(((..((((((......))))))..)))...))).....)))).)))))...))).((((......)))).---. ( -26.20) >DroYak_CAF1 6460 117 + 1 AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGAUGUCUCGUGGACGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA---A .(((.....(((((.((((.....((((.....))))..(((...(((((.((((((....))).))))))))...))).....)))).)))))...))).((((......)))).---. ( -23.50) >DroAna_CAF1 5854 115 + 1 AGAAAUUAAGUACUUAAGCACAAAUUGAAUACUCUAAAAGA-GAGUCGAUUCUUCAAAAGC-AGAAGAAUCU---GAUUGACAAGCUUUAGUGCCUCUGUAUGAUGAAUGUAUUGAUGAA .........(((((.((((............(((.....))-)((((((((((((......-.)))))))).---)))).....)))).))))).((.((((.......)))).)).... ( -24.70) >consensus AGCAUUUAAGUACUUAAGCACAAAUCGAAUAUGUUGAAGGAUGUUUUGGUUCUUCGAAGACGCGAAGAAUCAAUGAAUCAAUAAGCUUUAGUGCCUCUGUAUGAUGAACAAAUCGA___A .........(((((.((((.....((((.....))))..(((...(((((((((((......)))))))))))...))).....)))).))))).......((((......))))..... (-24.30 = -24.72 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006