Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,716,621 – 6,716,731 |
Length | 110 |
Max. P | 0.610734 |
Location | 6,716,621 – 6,716,731 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.59 |
Mean single sequence MFE | -28.80 |
Consensus MFE | -13.96 |
Energy contribution | -16.40 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.35 |
Structure conservation index | 0.48 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6716621 110 - 27905053 AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACUUCCGAAC------UGCAAUUGCAUCCUAAACGAUGUUCCUUCAAAUCUGGGAUGAACAAUGCGGUUUUGUUGUCAAU ..(((((((...........(((((((.......))).))))((((------((((.((((((((((...(((..........))))))))))..))))))))))))))))))... ( -30.50) >DroSec_CAF1 986 110 - 1 AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACAUCCGAAC------UGCAAUUGCAUCCUAAACGAUGUUCCUUACAAUCUGGGGUGCACAAUGCGGUUUUGGUGUCAAU .................................((((((((.((((------((((..(((((((((...(((((.....)).))))))))))))...)))))))).)))))))). ( -33.80) >DroSim_CAF1 986 110 - 1 AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACAUCCGAAC------UGCAAUUGCAACCUAAACGAUGUUCAUUACAAUCUGGGGUGCACAAUGCGGUUUUGGUGUCAAU .................................((((((((.((((------((((..((((.((((...(((((.....)).))))))).))))...)))))))).)))))))). ( -29.80) >DroEre_CAF1 1130 100 - 1 AAGAC---AAGUAUGUACCAGGAAU---UCAGCUUGAAUUCUGAAC------UGCAUUUGCAACUUAAUCGAUGCUC----UAAUAUGGAAUGCAUAAUUCGGUUUUGUUGUCAAU .....---....(((((...(((((---((.....)))))))....------)))))(((((((..(((((((((((----(.....)))..)))....))))))..)))).))). ( -22.90) >DroYak_CAF1 1145 106 - 1 AAGAC---AAGUAUGUACCAGGAAU---UCGGCUAGACUUCCGAACUUAAUUUGCAUUUGCAUCUUAGUCGAUGUUC----UAAUCUGCGAUGCACAAUUCGGUUUUGUUGUCAAU ..(((---((..........((((.---((.....)).))))(((((.((((((((((.(((..((((........)----)))..))))))))).)))).)))))..)))))... ( -27.00) >consensus AAGACAACAAGUAUGUACCAGGAAUUAUUUAGCUUGACUUCCGAAC______UGCAAUUGCAUCCUAAACGAUGUUC_UU_CAAUCUGGGAUGCACAAUGCGGUUUUGUUGUCAAU ..((((.((((.....(((.((((..............))))...........(((..(((((((((...(((..........))))))))))))...)))))))))).))))... (-13.96 = -16.40 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006