| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,714,368 – 6,714,510 |
| Length | 142 |
| Max. P | 0.738045 |
| Location | 6,714,368 – 6,714,477 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 88.07 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -25.10 |
| Energy contribution | -25.14 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738045 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6714368 109 - 27905053 GUUUGCGCUACACUUGUUACCAAGCGGCAUGUUGGUUCACGAGCACAAAAGCUGACAAGUGAUUUAGUGUUAUAUUUACC---CACUCUU---UAUUGCCGUGUUCGCUCACAAA ((..(((..((((..(((....)))((((.((.(((.....((((((((.(((....)))..))).)))))......)))---.))....---...)))))))).)))..))... ( -25.00) >DroSec_CAF1 10205 112 - 1 GUGUGCGCUACACUUGUUGCCAAGCGGCAUGUUGGUUCACGGGCACAACAGCUGACAAGUGAUUUAGUGUUAUAUUUACA---CACUCUUCUUCUUUGCAGUGUGCGCUCACAAA (((.((((..(((((((((((....))).((((((((....))).)))))...)))))))).....((((.......)))---)((.((.(......).)).)))))).)))... ( -36.70) >DroSim_CAF1 10359 112 - 1 GUGUGCGCUACACUUGUUGCCAAGCGGCAUGUUGGUUCACGGGCACAACAGCUGACAAGUGAUUUAGUGUUAUAUUUACC---CACUCUUCUUCUUUGCAGUGUGUGCUCACAAA ..(((.((((.((.((((((...)))))).)))))).)))(((((((...((((.((((.((...((((...........---)))).....)))))))))).)))))))..... ( -33.80) >DroEre_CAF1 10213 109 - 1 GUGUGCGCUACACUUGUUGCCAUGCGGCAUGUUGGUUCACGGGCACAACAGCUGACAAGUGAUUUAGGGUUAUUUUUACC---CACUCUU---CAUUGCAGUGUGUGCUCGCAAA (((((.((((.((.((((((...)))))).)))))).)))(((((((...((((...(((((....((((.......)))---).....)---)))).)))).)))))))))... ( -39.30) >DroYak_CAF1 10570 112 - 1 GUGUGCGCUACACUUGUUGCCAUGUGGCAUGUUGGUUCACGGGCACAACAGCUGACAAGUAAUUUAGGGUUAUAUUUCGCAGUGGUUUUU---UAUUGCAGUGUGUGGUCGCAAA ...((((((((((((((((((....))).((((((((....))).)))))...)))))))..................(((((((....)---)))))).....)))).)))).. ( -35.10) >consensus GUGUGCGCUACACUUGUUGCCAAGCGGCAUGUUGGUUCACGGGCACAACAGCUGACAAGUGAUUUAGUGUUAUAUUUACC___CACUCUU___CAUUGCAGUGUGUGCUCACAAA (((.((((.(((((.((......(((((.((((((((....))).))))))))).)..(((((.....)))))........................))))))))))).)))... (-25.10 = -25.14 + 0.04)
| Location | 6,714,402 – 6,714,510 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -24.74 |
| Consensus MFE | -11.80 |
| Energy contribution | -11.75 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6714402 108 + 27905053 AUAUAACACUAAAUCACUUGUCAGCUUUUGUGCUCGUGAACCAACAUGCCGCUUGGUAACAAGUGUAGCGCAAACACUUAAAAGAGCG-CCACCAGCA------AAAACAACAAA .......................(((...((((((((..(((((........))))).))((((((.......))))))....)))))-)....))).------........... ( -22.50) >DroPse_CAF1 7468 85 + 1 -----------AAUCAUUCGGGAUAUG-------CGUGG--CCAUAGGCCGCAUGGCAACAAGUGUACCGCACC----CCGAAGAGCAAACACUAGCA------ACAACAACAAC -----------..((.((((((...((-------(((((--((...)))))).((....))........))).)----)))))))((........)).------........... ( -26.50) >DroSec_CAF1 10242 108 + 1 AUAUAACACUAAAUCACUUGUCAGCUGUUGUGCCCGUGAACCAACAUGCCGCUUGGCAACAAGUGUAGCGCACACACUUCAAAGAGCG-CCACCAGCA------ACAACAACAAC .......................(.((((((((..(((...........((((((....))))))..((((..............)))-))))..)).------)))))).)... ( -25.74) >DroSim_CAF1 10396 108 + 1 AUAUAACACUAAAUCACUUGUCAGCUGUUGUGCCCGUGAACCAACAUGCCGCUUGGCAACAAGUGUAGCGCACACACUUCAAAGAGCG-CCACCAGCA------ACAACAACAAC .......................(.((((((((..(((...........((((((....))))))..((((..............)))-))))..)).------)))))).)... ( -25.74) >DroEre_CAF1 10247 108 + 1 AAAUAACCCUAAAUCACUUGUCAGCUGUUGUGCCCGUGAACCAACAUGCCGCAUGGCAACAAGUGUAGCGCACACACUUAAAAGAGCG-CCACCAGCA------AUAACAACAAA ..............(((((((....(((..(((.((((......))))..)))..))))))))))..((((..............)))-)........------........... ( -23.24) >DroYak_CAF1 10607 114 + 1 AUAUAACCCUAAAUUACUUGUCAGCUGUUGUGCCCGUGAACCAACAUGCCACAUGGCAACAAGUGUAGCGCACACACUUCAAAGAGCG-CCACCAGCAGCAACAACAACAACAAA .................((((..(((((((((((..((((......((((....))))....((((.....))))..))))..).)))-)....)))))).)))).......... ( -24.70) >consensus AUAUAACACUAAAUCACUUGUCAGCUGUUGUGCCCGUGAACCAACAUGCCGCAUGGCAACAAGUGUAGCGCACACACUUCAAAGAGCG_CCACCAGCA______ACAACAACAAA ..............(((((((..............((......)).((((....)))))))))))....................((........)).................. (-11.80 = -11.75 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:14 2006