Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,712,307 – 6,712,410 |
Length | 103 |
Max. P | 0.995741 |
Location | 6,712,307 – 6,712,410 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 90.96 |
Mean single sequence MFE | -34.14 |
Consensus MFE | -27.70 |
Energy contribution | -29.30 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.74 |
Structure conservation index | 0.81 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995741 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6712307 103 - 27905053 UC------GCGCGAUGCGUUUGGGUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAUUGCAACGGGCGGCAAUU ((------((.((.(((((((((((((((((((........))))))))..)))))))..((((.....))))...................)))).)).))))..... ( -30.70) >DroSec_CAF1 8168 109 - 1 UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU ......((((.((.(((((((((((.(((((((........)))))))))).........((((.....))))...............)))))))).)).))))..... ( -35.00) >DroSim_CAF1 8273 109 - 1 UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU ......((((.((.(((((((((((.(((((((........)))))))))).........((((.....))))...............)))))))).)).))))..... ( -35.00) >DroEre_CAF1 8231 99 - 1 UC----------GGUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUGAAGACUCGUGAAGAACGAAACGAAAUUCAAUUGCAAAUGCAUCGGGUGGCAAUU ((----------(((((((((((((.(((((((........))))))))))..((((...((((..........))))..))))....))))))))))))......... ( -31.00) >DroYak_CAF1 8462 109 - 1 UCGCACCCGCGCGGUGCGUUUGGUUUGGCAUUUCCUGAAACAAAUGCCAGCACUCAAGAGUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAUCGGGCGGCAAUU ......((((.((((((((((((((((((((((........))))))))).)).......((((.....))))...............))))))))))).))))..... ( -39.00) >consensus UCGCACCCGCGCGAUGCGUUUGGCUUGGCAUUUCCUGAAACAAAUGCCAGUACUCAAGAAUCGUGAAGAACGAAAAGAAAUUCAAUUGCAAAUGCAACGGGCGGCAAUU ......((((.((.((((((((..(((((((((........)))))))))..........((((.....))))...............)))))))).)).))))..... (-27.70 = -29.30 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:12 2006