Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,710,163 – 6,710,260 |
Length | 97 |
Max. P | 0.981812 |
Location | 6,710,163 – 6,710,260 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 88.85 |
Mean single sequence MFE | -21.63 |
Consensus MFE | -19.80 |
Energy contribution | -20.30 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -4.30 |
Structure conservation index | 0.92 |
SVM decision value | 1.90 |
SVM RNA-class probability | 0.981812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6710163 97 + 27905053 CAUGUGUGUUGUAUAUAAACUUUAUGUAUACAUACAUAUAUGUACAUUUGUAUAUACAAUACACAUCUUUCAAGCAUAUCUACCGGCAACAAUAACA .((((((((((((((((......(((((((.((....)).)))))))...))))))))))))))))..................(....)....... ( -24.50) >DroSec_CAF1 6038 93 + 1 CAUGUGUGUUGUAUAUAAACUUUAUGUAUAC----AUAUAUGUACAUUUGUAUAUACAAUAAACAUCUUUCAAGCAGAUCUACCGGCAACAUUAACA .((((.(((((((((((......(((((((.----.....)))))))...))))))))))).))))..................(....)....... ( -18.90) >DroSim_CAF1 6145 87 + 1 CAUGUGUGUUGUAUAUAAACUUUAUGUA----------UAUGUACAUUUGUAUAUACAAUACACAUCUUUUAAACAGAUCUACCGGUAACAUUAACA .((((((((((((((((......(((((----------....)))))...))))))))))))))))............................... ( -21.50) >consensus CAUGUGUGUUGUAUAUAAACUUUAUGUAUAC____AUAUAUGUACAUUUGUAUAUACAAUACACAUCUUUCAAGCAGAUCUACCGGCAACAUUAACA .((((((((((((((((.....((((((((......))))))))......))))))))))))))))..................(....)....... (-19.80 = -20.30 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:11 2006