Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,701,852 – 6,701,948 |
Length | 96 |
Max. P | 0.785495 |
Location | 6,701,852 – 6,701,948 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 69.77 |
Mean single sequence MFE | -24.62 |
Consensus MFE | -7.87 |
Energy contribution | -8.35 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.50 |
Mean z-score | -2.08 |
Structure conservation index | 0.32 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6701852 96 + 27905053 AUUU---AAACAGAAGGCAGAGAU----A---UAAGUACCGCUAUU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGUUGAUAACUUUGCUUAACUUUUGCACU ....---.........(((.((((----(---(.....(((.....-.)))...))))))----(((((..-.((.(------(((((((.....)))))))).)).))))))))... ( -18.40) >DroSec_CAF1 18047 96 + 1 AUUU---AAGCAGAAGGCAGAGAU----A---UAAGUACCGCUACU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGAUGAUAACAUUGUUUAACUUCUGCACU ....---..(((((((((..((((----(---(.....(((.....-.)))...))))))----...))..-.((((------((.((((.....)))).))))))..)))))))... ( -24.70) >DroSim_CAF1 18108 96 + 1 AUUU---AAGCAGAAGGCAGAGAU----A---UAAGUACCGCUAUU-CCGGCAAAUAUCU----AAAGUGA-GAAAC------AAAGUUAGAUGAUAGCAUUGUUUAACUUCUGCACU ....---..(((((((((..((((----(---(.....(((.....-.)))...))))))----...))..-.((((------((.((((.....)))).))))))..)))))))... ( -24.70) >DroEre_CAF1 18471 104 + 1 AUUU---AGGCAAAAGGCAGAGAUACAUA---UAAGUACCGCUAUU-CCGGAAAGUAUCUAUGUAAAUUGG-GCAAC------AAUGUUAGAUGAUAACAGUGCGUAGCUUCGGCACU ....---...(((...(((.((((((((.---...)).(((.....-.)))...)))))).)))...))).-(((..------..(((((.....))))).)))((.((....)))). ( -22.20) >DroYak_CAF1 18196 107 + 1 AUUU---GAGCGGAAGGCAGAGAU----A---UAAGUGCCGCUAUU-CCGGCGAGUAUCUAUGUAAAUUGGUGCCAUAAUGCUAAUGUUAGAUGAUAGCAGUGUUUGGCUUCUGCUCU ....---((((((((.(((.((((----(---(...(((((.....-.))))).)))))).)))........((((.((((((..((((....))))..)))))))))))))))))). ( -37.10) >DroAna_CAF1 20696 106 + 1 AUUUGCUAGGCCCAUGGCAGAGCUAAUCAUAGUAACUAGCAGGAGCACCCAAAAUAAUUUA--UUAACUGU-CCAAU-------AUGUUGGUUAGUAAGCAUAAAUAGCAUCAAUA-- .(((((((((((...)))...((((....))))..)))))))).............(((((--(..((((.-((((.-------...)))).))))....))))))..........-- ( -20.60) >consensus AUUU___AAGCAGAAGGCAGAGAU____A___UAAGUACCGCUAUU_CCGGCAAAUAUCU____AAAGUGA_GAAAC______AAAGUUAGAUGAUAACAUUGUUUAACUUCUGCACU .........(((((((........................(((......)))..................................((((.....)))).........)))))))... ( -7.87 = -8.35 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:10 2006