Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,681,182 – 6,681,302 |
Length | 120 |
Max. P | 0.986271 |
Location | 6,681,182 – 6,681,302 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -36.94 |
Consensus MFE | -33.96 |
Energy contribution | -34.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.83 |
Structure conservation index | 0.92 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6681182 120 + 27905053 CAAGGUGAAUGCCGAAAAGACUCCAUUCCUCACCCAGCGACUGCGCAUCAAGGUGAUACCCACCAUCGCCCUGGUGAAGGACAGCAAGACCAAGGACUUCAUUGUCGGAUUCACCGAUCU ...(((((((.((((...((.(((..((((((((..(((....))).....((((((.......))))))..)))).))))(.....).....)))..))....)))))))))))..... ( -37.40) >DroSec_CAF1 65938 120 + 1 CAAGGUGAAUGCCGAAAAGACUCCAUUCCUCACCCAGCGACUGCGCAUCAAGGUGAUACCCACCAUCGCCUUGGUGAAGGACAGCAAGACCAAGGACUUCAUUGUCGGAUUCACCGAUCU ...(((((((.((((...((.(((..((((((((..(((....)))...((((((((.......)))))))))))).))))(.....).....)))..))....)))))))))))..... ( -39.90) >DroSim_CAF1 66734 120 + 1 CAAGGUGAAUGCCGAAAAGACUCCAUUCCUCACCCAGCGACUGCGCAUCAAGGUGAUACCCACCAUCGCCCUGGUGAAGGACAGCAAGACCAAGGACUUUAUUGUCGGAUUCACCGAUCU ...(((((((.((((..(((.(((..((((((((..(((....))).....((((((.......))))))..)))).))))(.....).....))).)))....)))))))))))..... ( -37.90) >DroEre_CAF1 67173 120 + 1 CAAGGUUAAUGCCGAAAAGACUCCUUUCCUGACCCAGCGGCUGCGCAUCAAGGUGAUACCCACCAUCGCCCUGGUGAAGGACAGCAAGACCAAGGACUUCAUUGUCGGAUUCACCGAUCU ...(((.(((.((((...((.(((((((((...((((.(((((.....)).((((.....))))...)))))))...))))..........)))))..))....))))))).)))..... ( -33.20) >DroYak_CAF1 67783 120 + 1 CAAGGUGAAUGCCGAAAAGACUCCUUUCCUCACCCAGCGGCUGCGCAUCAAGGUUAUACCCACCAUCGCCCUGGUGAAGGACAGCAAGACCAAGGACUUCAUUGUCGGAUUCACCGAUCU ...(((((((.((((...((.(((((((((((((.((.(((((.....)).(((.......)))...))))))))).))))..........)))))..))....)))))))))))..... ( -36.30) >consensus CAAGGUGAAUGCCGAAAAGACUCCAUUCCUCACCCAGCGACUGCGCAUCAAGGUGAUACCCACCAUCGCCCUGGUGAAGGACAGCAAGACCAAGGACUUCAUUGUCGGAUUCACCGAUCU ...(((((((.((((...((.(((..((((((((..(((....))).....((((((.......))))))..)))).))))(.....).....)))..))....)))))))))))..... (-33.96 = -34.40 + 0.44)
Location | 6,681,182 – 6,681,302 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.33 |
Mean single sequence MFE | -44.40 |
Consensus MFE | -40.76 |
Energy contribution | -41.76 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.92 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6681182 120 - 27905053 AGAUCGGUGAAUCCGACAAUGAAGUCCUUGGUCUUGCUGUCCUUCACCAGGGCGAUGGUGGGUAUCACCUUGAUGCGCAGUCGCUGGGUGAGGAAUGGAGUCUUUUCGGCAUUCACCUUG .....(((((((((((.((.((..(((..((.....)).((((.((((..((((((..((.(((((.....))))).)))))))).))))))))..))).)))).)))).)))))))... ( -47.00) >DroSec_CAF1 65938 120 - 1 AGAUCGGUGAAUCCGACAAUGAAGUCCUUGGUCUUGCUGUCCUUCACCAAGGCGAUGGUGGGUAUCACCUUGAUGCGCAGUCGCUGGGUGAGGAAUGGAGUCUUUUCGGCAUUCACCUUG .....(((((((((((.((.((..(((..((.....)).((((.((((..((((((..((.(((((.....))))).)))))))).))))))))..))).)))).)))).)))))))... ( -46.10) >DroSim_CAF1 66734 120 - 1 AGAUCGGUGAAUCCGACAAUAAAGUCCUUGGUCUUGCUGUCCUUCACCAGGGCGAUGGUGGGUAUCACCUUGAUGCGCAGUCGCUGGGUGAGGAAUGGAGUCUUUUCGGCAUUCACCUUG .....(((((((((((((...(((.(....).)))..))))(((((((..((((((..((.(((((.....))))).)))))))).)))))))...)))(((.....))).))))))... ( -46.90) >DroEre_CAF1 67173 120 - 1 AGAUCGGUGAAUCCGACAAUGAAGUCCUUGGUCUUGCUGUCCUUCACCAGGGCGAUGGUGGGUAUCACCUUGAUGCGCAGCCGCUGGGUCAGGAAAGGAGUCUUUUCGGCAUUAACCUUG .....(((.(((((((.((.((..((((((..((.((((((((.....))))))..((((.(((((.....))))).)).)))).))..))....)))).)))).)))).))).)))... ( -38.40) >DroYak_CAF1 67783 120 - 1 AGAUCGGUGAAUCCGACAAUGAAGUCCUUGGUCUUGCUGUCCUUCACCAGGGCGAUGGUGGGUAUAACCUUGAUGCGCAGCCGCUGGGUGAGGAAAGGAGUCUUUUCGGCAUUCACCUUG .....(((((((((((.((.((..(((((((.....)).((((.((((..((((..(.((.((((.......)))).)).))))).))))))))))))).)))).)))).)))))))... ( -43.60) >consensus AGAUCGGUGAAUCCGACAAUGAAGUCCUUGGUCUUGCUGUCCUUCACCAGGGCGAUGGUGGGUAUCACCUUGAUGCGCAGUCGCUGGGUGAGGAAUGGAGUCUUUUCGGCAUUCACCUUG .....(((((((((((((...(((.(....).)))..))))(((((((..((((((..((.(((((.....))))).)))))))).)))))))...)))(((.....))).))))))... (-40.76 = -41.76 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:09 2006