Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,680,985 – 6,681,102 |
Length | 117 |
Max. P | 0.907839 |
Location | 6,680,985 – 6,681,102 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -34.28 |
Consensus MFE | -30.38 |
Energy contribution | -31.46 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.47 |
Structure conservation index | 0.89 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6680985 117 - 27905053 GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAGCAAUU---UUGGGGAUUAA ......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((..(((...........))---)..)))..... ( -37.60) >DroSec_CAF1 65741 117 - 1 GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGUUUG---AUUAA ......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))............((((((........)))---))).. ( -30.70) >DroSim_CAF1 66534 120 - 1 GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGAUUGGGGAUUAA ......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((..(....(((.....)))...)..)))..... ( -34.70) >DroEre_CAF1 66973 120 - 1 GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUAAAAUAGAUUAACAAUUAGUGUGGGGAUUAU ......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((((...(((........)))...)))))..... ( -36.20) >DroYak_CAF1 67583 120 - 1 GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUUGACAUCUCGAAGAACUCCUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUAAAAUGGAUUUACAAUUAGUUUGACGAUUAU (((((.((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))...((......)).))))).................. ( -32.20) >consensus GUAAAAGUGGCAAACAAUGUUGGGCGACUUUUUCGACAUCUCGAAGAACUCUUUUUCGUCGGCCAGCUCGGUGUAGGUGCCAUGACCCUGGAAAAGAUUAACAAUUAGUUUGGGGAUUAA ......((((((.(((..(((((.((((((((((((....)))))))).........)))).)))))....)))...))))))..(((((((...(((.....)))..)))))))..... (-30.38 = -31.46 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:07 2006