Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,677,119 – 6,677,223 |
Length | 104 |
Max. P | 0.635984 |
Location | 6,677,119 – 6,677,223 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 79.02 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -12.36 |
Energy contribution | -14.25 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.22 |
Mean z-score | -1.81 |
Structure conservation index | 0.56 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635984 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6677119 104 - 27905053 GUUAUCUUUUUACCAUGCU-------------CAAUUUAAUUUGCUUAUGACAUCCUUAAUUUUGCCAUAUCCCGACUGUACACUUUCGGCUAAUUUAUUGGUGAACUUGGUAACCU ((((((..(((((((.((.-------------.((((.....(((....).)).....))))..))......((((..(....)..)))).........)))))))...)))))).. ( -18.00) >DroSec_CAF1 61710 104 - 1 GUUAUCUUCUUACCAUAGU-------------AGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUGAUCUUGGUAACAU ((((((...((((((.(((-------------((((...)))))))...((((..........)))).......(((((((....))))))).......))))))....)))))).. ( -21.90) >DroSim_CAF1 62707 104 - 1 GUUAUCUUCUUACCAUAGU-------------CGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUAAUCUUGGUAACAU ((((((...((((((((..-------------(((..............((((..........))))((((((.....))))))..)))..))......))))))....)))))).. ( -21.30) >DroEre_CAF1 62900 104 - 1 GUUAUCUUCUUACCAUAGU-------------UGAUUUUAUUUGCUUAGGGCAUCUUUGAUUUUGUCAUAUCCCGACUGGAUAUUGUCAGUUACUUUGUUGGUGAGCCUGGUAACAU ((((((..(((((((.(((-------------((((..(((((.....(((.((...((((...)))).)))))....)))))..))))...)))....)))))))...)))))).. ( -25.60) >DroYak_CAF1 63424 104 - 1 CUUAACUUCUUACCAUAGU-------------UGAAUUUAUUUGCUUAGGGCAUCCUUUAUUUUAUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUGUUGGUCAGCUUGGUAACAU .........((((((.(((-------------(((.......(((.....))).....................(((((((....)))))))..........))))))))))))... ( -20.40) >DroAna_CAF1 68040 115 - 1 AUU--CAAUUUACCAAAAUAUUUCGUAGGUAAUGAGCUUAUCUGCUAAGGGCAUCUUUUAUUUUGUCAAAGCUUGACUGGACGCUAUCUGUGACUUUGUUGGUAAGUUUGGUGACUU ...--.((((((((((...(..(((((((((.((..((..((.(((...((((..........))))..)))..))..)).)).)))))))))..)..)))))))))).(....).. ( -25.00) >consensus GUUAUCUUCUUACCAUAGU_____________UGAUUUUAUUUGCUUAGGGCAUCCUUUAUUUUGUCAUAUCCCGACUGGAUAUUUUCGGUUACUUUAUUGGUGAGCUUGGUAACAU ((((((..(((((((...........................(((.....))).....................(((((((....))))))).......)))))))...)))))).. (-12.36 = -14.25 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:06 2006