Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,675,924 – 6,676,019 |
Length | 95 |
Max. P | 0.850102 |
Location | 6,675,924 – 6,676,019 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -19.86 |
Consensus MFE | -10.14 |
Energy contribution | -10.52 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.17 |
Mean z-score | -2.24 |
Structure conservation index | 0.51 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6675924 95 + 27905053 UAGCUGAGUUUCCAUUAUUUACAUACUU----AAAU----GUAUGACUCCAAUGAAAACAUUUAUGCUCGCAGAAAGCUCAAACAAGGGAGCUGUUUUAACUA ..((.((((............(((((..----....----))))).....((((....))))...))))))....(((((........))))).......... ( -16.80) >DroSec_CAF1 60537 85 + 1 UAGCUCAGUUCCCAUUAUUUACAU------------------AUGAUUCCCAUGAAAACAUUUAUACUCACAGAAAGCUCUCACAAGGGAGCUGUUUUAACUA (((..((((((((..........(------------------(((.....))))..................((......))....))))))))..))).... ( -15.10) >DroSim_CAF1 61523 95 + 1 UAGCUACGUUUUCAUUAUUUACAUACUU----AAAU----GUAUGAUUCCCAUGAAAACAUUUAUACUCCCAGAAAGCUCUCACAAGGGAGCUGUUUUAACUA .......((((((((......(((((..----....----)))))......))))))))................(((((((....))))))).......... ( -22.40) >DroEre_CAF1 61682 103 + 1 UAGCUCGGUUCCCAUUACUUACAUACAUACUUAAAUGUGCGUAUAACUCCCAUGAAAACAUUUGUUCUCGCAGAAAGCUCUCCCAAGGGAGCUGUUUUAGCUA (((((((((((((......(((.(((((......))))).)))..........((.(((....))).))((.....))........))))))))....))))) ( -23.50) >DroYak_CAF1 62212 94 + 1 UAGCUCAGUUCCCAUUAUUUACAUACUUAUU---------GUAUGACUCCUAGGAAAACAUUUAUACUCGCAGAAAGCUCUCACAAGGGAGCUGGUUUAACUA .(((.((((((((........(((((.....---------)))))........................((.....))........)))))))))))...... ( -21.50) >consensus UAGCUCAGUUCCCAUUAUUUACAUACUU____AAAU____GUAUGACUCCCAUGAAAACAUUUAUACUCGCAGAAAGCUCUCACAAGGGAGCUGUUUUAACUA (((..((((((((........(((((..............)))))...........................((....))......))))))))..))).... (-10.14 = -10.52 + 0.38)
Location | 6,675,924 – 6,676,019 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.07 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -15.50 |
Energy contribution | -15.08 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.17 |
Mean z-score | -2.13 |
Structure conservation index | 0.65 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.850102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6675924 95 - 27905053 UAGUUAAAACAGCUCCCUUGUUUGAGCUUUCUGCGAGCAUAAAUGUUUUCAUUGGAGUCAUAC----AUUU----AAGUAUGUAAAUAAUGGAAACUCAGCUA ..........((((.....(((((.((((.....)))).)))))((((((((((....(((((----....----..)))))....))))))))))..)))). ( -22.90) >DroSec_CAF1 60537 85 - 1 UAGUUAAAACAGCUCCCUUGUGAGAGCUUUCUGUGAGUAUAAAUGUUUUCAUGGGAAUCAU------------------AUGUAAAUAAUGGGAACUGAGCUA (((((....(((.((((..((....))((((((((((..........))))))))))....------------------...........)))).)))))))) ( -18.80) >DroSim_CAF1 61523 95 - 1 UAGUUAAAACAGCUCCCUUGUGAGAGCUUUCUGGGAGUAUAAAUGUUUUCAUGGGAAUCAUAC----AUUU----AAGUAUGUAAAUAAUGAAAACGUAGCUA (((((......((((((..((....)).....))))))....((((((((((......(((((----....----..)))))......))))))))))))))) ( -28.80) >DroEre_CAF1 61682 103 - 1 UAGCUAAAACAGCUCCCUUGGGAGAGCUUUCUGCGAGAACAAAUGUUUUCAUGGGAGUUAUACGCACAUUUAAGUAUGUAUGUAAGUAAUGGGAACCGAGCUA (((((.....(((((((........((.....))((((((....))))))..))))))).((((.((((......)))).))))..............))))) ( -27.60) >DroYak_CAF1 62212 94 - 1 UAGUUAAACCAGCUCCCUUGUGAGAGCUUUCUGCGAGUAUAAAUGUUUUCCUAGGAGUCAUAC---------AAUAAGUAUGUAAAUAAUGGGAACUGAGCUA ..........(((((.(((((.((......)))))))..........((((((..(..(((((---------.....)))))....)..))))))..))))). ( -21.00) >consensus UAGUUAAAACAGCUCCCUUGUGAGAGCUUUCUGCGAGUAUAAAUGUUUUCAUGGGAGUCAUAC____AUUU____AAGUAUGUAAAUAAUGGGAACUGAGCUA (((((.....(((((........)))))................((((((((......(((((..............)))))......))))))))..))))) (-15.50 = -15.08 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:02 2006