Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,672,859 – 6,672,972 |
Length | 113 |
Max. P | 0.584487 |
Location | 6,672,859 – 6,672,972 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 79.65 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -18.64 |
Energy contribution | -20.25 |
Covariance contribution | 1.61 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.58 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6672859 113 + 27905053 CAACGGGGAAAGCCAAACAGGCAACCGCCACAGAUCCGAAUCGGAUUCCCACAACCGCGAUAUGUUUAUGGAGAUAACCGACUCCAUGGACGAACUGGCCAGUCCGGGAU---CAC ....((((...(((.....)))..)).))...(((((....((((((.((((......)...(((((((((((........)))))))))))...)))..))))))))))---).. ( -34.80) >DroGri_CAF1 81913 107 + 1 ACACAAGGAAACCAA---UGGAAAACACAACAAAUCCGAA------GCCAUUAGCCGAGAGGUAUUAAUCGAAAUAUCCGAUUCUCUCGACGAAUUCAGUAGUCCGAGAAGACAAC ......(((....((---(((...................------.))))).(((....))).............)))..(((((..(((..........))).)))))...... ( -17.25) >DroSec_CAF1 57450 113 + 1 AAACAGGGAAAGCGAAACAGGCAAUCGCCACAGAUCCGAAUCGGAUUCCCAUAACCGCGAUAUGUUUAUGGAGAUAAGCGACUCCAUGGACGAACUGGCCAGUCCGGGAU---CAC .....(((((.........(((....))).....((((...)))))))))........(((.(((((((((((........)))))))))))..((((.....)))).))---).. ( -33.60) >DroSim_CAF1 57946 113 + 1 AAACAGGGAAAGCGAAACAGGCAAUCGCCACAGAACCGAAUCGGAUUCCCAUAACCGCGAUAUGUUUAUGGAGAUAAGCGACUCAAUGGACGACCUGGCCAGUCCGGGAU---CGC .....(((((.........(((....)))......(((...))).)))))......(((((.(((((((.(((........))).))))))).(((((.....)))))))---))) ( -33.10) >DroEre_CAF1 58490 113 + 1 AAACGGGGAAAGCCAAACAGGCAAUCGCCACAGAUCCGAACCGGAUGCCCAUAAUCGUGAUCUGUUCAUGGAAAUAACCGAUUCCAUGGACGAACUGGCAAGUCCGGAAU---CCC ...((((((..(((.....)))..))((((.((((((((...((....))....))).)))))((((((((((........))))))))))....))))...))))....---... ( -37.80) >DroYak_CAF1 59120 113 + 1 AAACGGGGAAAGCCAAUCCGGCAAUCGCCACAGAUCCGAAUCGGACUCCCAUAACCGCGAUCUGUUCAUGGAAAUAACCGACUCCAUGGACGAACUGGCCAGUCCGGGAU---CCC ....((.((..(((.....)))..)).))...(((((....((((((.......(((.(.((.(((((((((..........))))))))))).))))..))))))))))---).. ( -36.30) >consensus AAACAGGGAAAGCCAAACAGGCAAUCGCCACAGAUCCGAAUCGGAUUCCCAUAACCGCGAUAUGUUUAUGGAAAUAACCGACUCCAUGGACGAACUGGCCAGUCCGGGAU___CAC ......(((..((......(((....))).(((((((.....))))................(((((((((((........)))))))))))..)))))...)))........... (-18.64 = -20.25 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:00 2006