| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,670,550 – 6,670,660 |
| Length | 110 |
| Max. P | 0.765011 |
| Location | 6,670,550 – 6,670,660 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.16 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -4.75 |
| Energy contribution | -5.67 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.22 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6670550 110 + 27905053 AAUUUUUGGGAAUGCAAUUGCAUUCUUAAGAUGCCGACAUGAGUA---UGAUAACUGAGUCAAAUGGAUACU-------ACCAAACUGAUUCCAACCGGUAACAAGUAUCCGGUGAACAA ...((((((((((((....)))))))))))).((((((.(.(((.---.....))).))))....(((((((-------.....((((........))))....))))))))))...... ( -32.50) >DroSec_CAF1 55150 104 + 1 AAUUUUUAAGCAUGCAAUUGCAUUCUUAACAUACCGACAUUAGUA---UAAUAACUAAGUCAAAUGGAUAUU-------AACAAACUGGUUUCAAU---UC-CAA--AGCCGAUGAACAA .....(((((.((((....)))).)))))(((...(((.(((((.---.....))))))))...((((....-------(((......))).....---))-)).--.....)))..... ( -19.00) >DroSim_CAF1 55781 104 + 1 AAUUUUUAAGCAUGCAAUUGCAUUCUUAACAUACCGACAUUAGUG---UAAUAACUGAGUCAAAUGGAUAUU-------AACAAACUGGUUUCCAG---UC-CAA--AGCCAAUGAACAA .....(((((.((((....)))).)))))(((...(((.(((((.---.....))))))))...(((((...-------(((......)))....)---))-)).--.....)))..... ( -20.80) >DroEre_CAF1 56183 103 + 1 AAAUUUUAAGCACGCAAUUCCCAUUUUAACAUGCCGACUUGAGUA---UGAUAACUGAGUUAAAUGGAUAUG-------ACUAAGCUGAUUCCAUG---UC-CAA--A-CUGGUGAAGAG .................(((((.......(((((........)))---)).......((((...((((((((-------.............))))---))-)))--)-)))).)))... ( -17.22) >DroYak_CAF1 56821 111 + 1 AAUUUUCAAGCACGCAAUUGCCACUUUAACUUGCCGACAUAAGUAUAAUGAUAACUGAGUUAAAUGGUUAUACCAUUGAAAUUAGCUA--UCCAAG---UC-CAA--A-CUGGUGAACAG .................(..(((.(((.(((((...((....)).....((((.((((....(((((.....)))))....)))).))--))))))---).-.))--)-.)))..).... ( -20.00) >consensus AAUUUUUAAGCAUGCAAUUGCAUUCUUAACAUGCCGACAUGAGUA___UGAUAACUGAGUCAAAUGGAUAUU_______AACAAACUGAUUCCAAG___UC_CAA__A_CCGGUGAACAA .....(((((.((((....)))).)))))..(((((((.(.(((.........))).))))...((((......................)))).................))))..... ( -4.75 = -5.67 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:58 2006