Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 927,786 – 927,879 |
Length | 93 |
Max. P | 0.749232 |
Location | 927,786 – 927,879 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 75.68 |
Mean single sequence MFE | -30.33 |
Consensus MFE | -9.42 |
Energy contribution | -9.73 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -2.51 |
Structure conservation index | 0.31 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749232 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 927786 93 - 27905053 UU--GGGAGCAACCCUUCGGCCGGC-----GGCGGAACUUCGGCCUCUGCCUGGCUGCCGGAAUUUCCGCCUCCAUUCUCCAUUCGAGUAAAUAAUUUCC ..--.((((.....(....)..((.-----(((((((.((((((..((....))..))))))..))))))).))...))))................... ( -30.50) >DroPse_CAF1 100856 81 - 1 UUCGGGGAUCAACCCUUAGUCUCG------GGCGGAACUU------CUGCUUGGAUGGAGGAAUUUCCGCCUCCAU-------UCGAGUAAAUAAUUUUC ...((((.((..(((........)------))..)).)))------)((((((((((((((........)))))))-------))))))).......... ( -31.50) >DroSim_CAF1 22725 93 - 1 UU--GGGAGCAACCCUUCGGCCGGC-----GGCGGAACUUCGGCCUGUGCCUGGCUGCCGGAAUUUCCGCCUCCAUUCUCCAUUCGAGUAAAUAAUUUCC ..--.((((.....(....)..((.-----(((((((.((((((..((.....)).))))))..))))))).))...))))................... ( -30.40) >DroYak_CAF1 37496 93 - 1 UU--GCGAGCACCCCUUCGGACGGC-----GGUGGAACUCCGGCUUCUGCCUGACUGCCGGAAUAUCCGCCUCCAUUCUCCAUUUGAAUAAAUAAUUUCC .(--(.(((.....(....)..((.-----((((((..((((((.((.....))..))))))...)))))).))...))))).................. ( -28.90) >DroAna_CAF1 15205 85 - 1 UU--GGCAGCAACCCUUCGGACGGGCAACGGACGGAACUU------CUGCCAAGCUGGCGGAAUUUCCGCCUCCAC-------UGAAGUAAAUAAUUUUC ..--..........((((((...(....)((.(((((.((------(((((.....))))))).)))))))....)-------)))))............ ( -29.20) >DroPer_CAF1 100878 81 - 1 UUCGGGGAUCAACCCUUAGUCUCG------GGCGGAACUU------CUGCUUGGAUGGAGGAAUUUCCGCCUCCAU-------UCGAGUAAAUAAUUUUC ...((((.((..(((........)------))..)).)))------)((((((((((((((........)))))))-------))))))).......... ( -31.50) >consensus UU__GGGAGCAACCCUUCGGCCGGC_____GGCGGAACUU______CUGCCUGGCUGCCGGAAUUUCCGCCUCCAU_______UCGAGUAAAUAAUUUCC ....(((.....)))...............(((((((............((........))...)))))))............................. ( -9.42 = -9.73 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:22 2006