Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,662,380 – 6,662,473 |
Length | 93 |
Max. P | 0.602008 |
Location | 6,662,380 – 6,662,473 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.37 |
Mean single sequence MFE | -21.35 |
Consensus MFE | -17.65 |
Energy contribution | -17.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.47 |
Structure conservation index | 0.83 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6662380 93 - 27905053 AUACGU--GUUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGCAAA------CCUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU ...(((--.((((((((....))))))))....)))..-......(((((...------.......))......(((((..((.....))..)))))))).. ( -21.10) >DroSec_CAF1 46981 91 - 1 AUACG----UUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGAAAA------GCUAAAUGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU .....----((((((((....)))))))).....(.((-((...(((......------)))...)))).)...(((((..((.....))..)))))..... ( -22.60) >DroSim_CAF1 47612 91 - 1 AUACG----UUUGUUCAAAUGUGAGCAAGAGAAAUGAG-CAGUGAGCCGAAAA------GUUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU .....----((((((((....)))))))).........-......(((....(------((.....))).....(((((..((.....))..)))))))).. ( -19.90) >DroYak_CAF1 48514 102 - 1 AUAUGCACGUUUGUACAAAUGUGAGCAAGAGAAAUGAGCCAGUGAGCCGACAAACUCAAACUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU .....(((((((....)))))))..............(((..((((........))))................(((((..((.....))..)))))))).. ( -21.80) >consensus AUACG____UUUGUUCAAAUGUGAGCAAGAGAAAUGAG_CAGUGAGCCGAAAA______GCUAAGAGCUGAAAGCGUUUUGGCAAUAUGUUGAAAUGGGCAU .........((((((((....))))))))................(((..................((.....))((((..((.....))..)))).))).. (-17.65 = -17.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:56 2006