Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,661,074 – 6,661,166 |
Length | 92 |
Max. P | 0.833780 |
Location | 6,661,074 – 6,661,166 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 87.20 |
Mean single sequence MFE | -26.96 |
Consensus MFE | -17.84 |
Energy contribution | -19.04 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.73 |
Structure conservation index | 0.66 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833780 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6661074 92 - 27905053 UCCGACAUCCAGUGGCAAUCUCUGUACACAAAAGGAAAGAAGGUUGGAAAAA---AAACGACCGUUCUGGAU----GCUCGAUUACAGGAGAAUCGGAG ((((((((((((.(((....(((...(......)...))).(((((......---...))))))))))))))----)(((........)))..))))). ( -27.00) >DroSec_CAF1 45669 95 - 1 UCCGACAUCCAGUGGCAAUGUCAGUACACAAAA-GAAAGAAGGUUGGAUAAA---AAACGACCGUUCUGGAUGGAAGCUCGAUUACAGGAGAAUCGGAG ((((((((((((.(((..(((......)))...-.......(((((......---...)))))))))))))))....(((........)))..))))). ( -27.00) >DroSim_CAF1 46300 98 - 1 UCCGACAUCCAGUGGCAAUCUCUGUACACAAAA-GAAAGAAGGUUGGAUAAAAAAAAACGACCAUUCUGGAUGGAUGCUCGAUUACAGGAGAAUCGGAG (((((((((((((((((.....))).)))....-...(((((((((............))))).))))...))))))(((........)))..))))). ( -27.70) >DroEre_CAF1 46922 90 - 1 UCCGACAUCCAGUGGCAAUCUCUGGACACAAA--GCAAGAAGGUUGGAGAAA---AAACGACCGUUCUGGAU----GCUCGAUUACAGGAGCAUCGGAG (((....(((((.(.....).)))))......--...(((((((((......---...))))).)))).(((----((((........)))))))))). ( -28.70) >DroYak_CAF1 47204 81 - 1 UCCGACAUCCAGUGGCAAUCUCUGGACACAAA--GAACGA---------AAA---AAACGAUCGUUCUGGAU----GCUCGAUUACAGGAGAAUCGGAG ((((((((((.(((.((.....))..)))..(--((((((---------...---......)))))))))))----)(((........)))..))))). ( -24.40) >consensus UCCGACAUCCAGUGGCAAUCUCUGUACACAAAA_GAAAGAAGGUUGGAUAAA___AAACGACCGUUCUGGAU____GCUCGAUUACAGGAGAAUCGGAG (((((.((((((((............))).........((((((((............))))).)))))))).....(((........)))..))))). (-17.84 = -19.04 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:55 2006