Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,659,550 – 6,659,662 |
Length | 112 |
Max. P | 0.661365 |
Location | 6,659,550 – 6,659,662 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -20.11 |
Energy contribution | -20.55 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.64 |
Structure conservation index | 0.74 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6659550 112 - 27905053 CAUUAAUGCCAGAGUCACCGUAGCCUUGUUUUUCAAUUGAUGGCCUAAAUAGAGGCAUUGUUUAAAGAAAUAAACAGCUGCUUUAGCCAGCACUUAGCUAUUUAGUUAGGUA (((((((....(((.(......).)))........)))))))((((......))))..((((((......))))))(((((....).))))((((((((....)))))))). ( -24.50) >DroSec_CAF1 44174 112 - 1 CAUUAAUGCCACAGCCACCGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGAGGCAUUGUUUAAAGAAAUAAACAGCUGCUUUAGGUAGCACUUAGCUAUUUAGGUAGCUA ............(((.((((((((..(((((((...((((..((((......)))).....))))....))))))))))))..((((((((.....))))))))))).))). ( -30.90) >DroEre_CAF1 45337 107 - 1 CACUAAUGCCAGAGUCACUGUAGCCUUGUUUAUCCAUUGAUGGCCUAAAUCGGGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUGGCUGGCACUUAGCUACCUAAAU----- ..(((((((((..((((..(((((..(((((((...((((((.(((.....))).)))).....))...))))))))))))..))))))))).))))..........----- ( -29.80) >DroYak_CAF1 45644 107 - 1 CAUUAAUGCCAGAGUCACUGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGGGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUAGCUGCCACUUAGCUACCUCAAU----- ...........(((.....(((((..(((((((...((((((.(((.....))).)))).....))...))))))))))))..((((((.....)))))).)))...----- ( -23.30) >consensus CAUUAAUGCCAGAGUCACCGUAGCCUUGUUUAUCAAUUGAUGGCCUAAAUAGAGGCAUUGCUUAAAGAAAUAAACAGCUGCUUUAGCUAGCACUUAGCUACCUAAAU_____ ..((((((((((.......(((((..(((((((...((((..((((......)))).....))))....)))))))))))).....)))))).))))............... (-20.11 = -20.55 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:52 2006