Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,654,149 – 6,654,259 |
Length | 110 |
Max. P | 0.936830 |
Location | 6,654,149 – 6,654,259 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -18.12 |
Energy contribution | -17.80 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -2.62 |
Structure conservation index | 0.66 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.936830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6654149 110 + 27905053 UUCCGAAAUCUCAGAUAUCGUCGGAUGAUUUUCCAGUAAACACCUACUUUGGAGGUAAUUUGUGGGAUGAUCCCCCAUAAAUACUGGAAACAUCAAACCAUAUGGUGAAU .(((((.(((...)))....)))))(((((((((((((...((((.(....)))))..((((((((.......))))))))))))))))).)))).(((....))).... ( -33.50) >DroSec_CAF1 39200 110 + 1 UUCUGAAAUCUCAGAUAUCGUCGGAUGAUUUUCCGGUAAACACCUACUUUGGAGGUAAUUUGUGGGAUGAUCCCCCAUAAAUACUUGAAACAUCAAACCAUAUGGUGAAU .(((((....)))))..(..(((((......)))))..).((((.....((((((((.((((((((.......)))))))))))))((....))...)))...))))... ( -30.60) >DroSim_CAF1 39409 110 + 1 UUCUGAAAUCUCAGAUAUCGUCGGAUGAUUUUCCGGUAAACACCUACUUUGGAGGUAAUUUGUGGGAUGAUCCUCCAUAAAUACUCGAAACAUCAAACCAUAUGGUGAAU .(((((....)))))..(..(((((......)))))..).((((.....(((.((((.((((((((.......)))))))))))).((....))...)))...))))... ( -26.80) >DroEre_CAF1 39957 91 + 1 UUUUGAAAUCUCCGAUUUUGUCGGAUGGUUUUCCAGU-------------------AAUUUGUGGGAUGAUCCCCCAUAAAUACCCGAAACAUUAAACCAUAUGGUGAAU ((((((((((((((((...)))))).)))))....((-------------------(.((((((((.......))))))))))).)))))......(((....))).... ( -22.50) >DroYak_CAF1 39931 91 + 1 UUCUGAAAUCUCAGAUAUUGUCGGAUGGUUUUCCAGC-------------------AAUUUGUGGGAUGAUCCCCCAUAAAUACUCGAAACAUUAAACCAUAUGGUGAAU .(((((....)))))..(..(((.(((((((((.((.-------------------.(((((((((.......))))))))).)).))......))))))).)))..).. ( -23.70) >consensus UUCUGAAAUCUCAGAUAUCGUCGGAUGAUUUUCCAGUAAACACCUACUUUGGAGGUAAUUUGUGGGAUGAUCCCCCAUAAAUACUCGAAACAUCAAACCAUAUGGUGAAU .(((((.(((...)))....)))))((((((((.(((....((((.......)))).(((((((((.......)))))))))))).)))).)))).(((....))).... (-18.12 = -17.80 + -0.32)
Location | 6,654,149 – 6,654,259 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 84.00 |
Mean single sequence MFE | -25.20 |
Consensus MFE | -16.28 |
Energy contribution | -16.60 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -1.91 |
Structure conservation index | 0.65 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6654149 110 - 27905053 AUUCACCAUAUGGUUUGAUGUUUCCAGUAUUUAUGGGGGAUCAUCCCACAAAUUACCUCCAAAGUAGGUGUUUACUGGAAAAUCAUCCGACGAUAUCUGAGAUUUCGGAA ........(((.(((.((((((((((((((((.(((((.....))))).))).(((((.......)))))..)))))))))..)))).))).)))((((......)))). ( -31.60) >DroSec_CAF1 39200 110 - 1 AUUCACCAUAUGGUUUGAUGUUUCAAGUAUUUAUGGGGGAUCAUCCCACAAAUUACCUCCAAAGUAGGUGUUUACCGGAAAAUCAUCCGACGAUAUCUGAGAUUUCAGAA .....((....))(((((.((((((..(((((.((((((................)))))))))))((((((...((((......))))..)))))))))))).))))). ( -25.59) >DroSim_CAF1 39409 110 - 1 AUUCACCAUAUGGUUUGAUGUUUCGAGUAUUUAUGGAGGAUCAUCCCACAAAUUACCUCCAAAGUAGGUGUUUACCGGAAAAUCAUCCGACGAUAUCUGAGAUUUCAGAA .....((....))(((((.((((((..(((((.((((((................)))))))))))((((((...((((......))))..)))))))))))).))))). ( -25.79) >DroEre_CAF1 39957 91 - 1 AUUCACCAUAUGGUUUAAUGUUUCGGGUAUUUAUGGGGGAUCAUCCCACAAAUU-------------------ACUGGAAAACCAUCCGACAAAAUCGGAGAUUUCAAAA ..........((((((.....(((((..((((.(((((.....))))).)))).-------------------.)))))))))))(((((.....))))).......... ( -22.30) >DroYak_CAF1 39931 91 - 1 AUUCACCAUAUGGUUUAAUGUUUCGAGUAUUUAUGGGGGAUCAUCCCACAAAUU-------------------GCUGGAAAACCAUCCGACAAUAUCUGAGAUUUCAGAA .........(((((((......((.(((((((.(((((.....))))).))).)-------------------))).))))))))).........((((......)))). ( -20.70) >consensus AUUCACCAUAUGGUUUGAUGUUUCGAGUAUUUAUGGGGGAUCAUCCCACAAAUUACCUCCAAAGUAGGUGUUUACUGGAAAAUCAUCCGACGAUAUCUGAGAUUUCAGAA .....((....))(((((.((((((.(((((..(((((.....)))))...........................((((......))))..))))).)))))).))))). (-16.28 = -16.60 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:49 2006