Locus 2332

Sequence ID 3R_DroMel_CAF1
Location 6,651,911 – 6,652,007
Length 96
Max. P 0.938145
window3769

overview

Window 9

Location 6,651,911 – 6,652,007
Length 96
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 74.60
Mean single sequence MFE -22.25
Consensus MFE -10.89
Energy contribution -13.70
Covariance contribution 2.81
Combinations/Pair 1.17
Mean z-score -2.47
Structure conservation index 0.49
SVM decision value 1.27
SVM RNA-class probability 0.938145
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6651911 96 - 27905053
GGCU-U-GCCAUCAUCAGGUGGUGGUAGUAAUAUUUCUUAUUACCUACUUUAAAUAUUUCAAGUAGUUUUCGAAAGGG-UCUUAAAAGUAGAUUACCUA
....-.-((((((....))))))((((((((((.....))))))(((((((...(((.....)))...(((....)))-.....)))))))..)))).. ( -21.30)
>DroSec_CAF1 37042 90 - 1
GGCU-U-GCCAUCA---G---GUGGUGGUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGG-UCUUAAAAGUAGAUUACCUA
((..-.-.))...(---(---((((((((((((.....))))))).........(((((((((((...(((....)))-))))))))))).))))))). ( -28.80)
>DroSim_CAF1 37273 90 - 1
GGCU-U-UCCAUCA---G---GUGGUGGUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGG-UCUUAAAAGUAGAUUACCUA
....-.-......(---(---((((((((((((.....))))))).........(((((((((((...(((....)))-))))))))))).))))))). ( -27.00)
>DroYak_CAF1 37649 78 - 1
GGGUUUUGCUAGCA---A---G---------UGGCCGUAACUAUCUAUAUUAACUAUUUUUAGUAGUUUCCAAAAGGGC--AUAAAAAUAGAUUA----
(((..(((((((.(---(---(---------(((..(((........)))...)))))))))))))..)))........--..............---- ( -11.90)
>consensus
GGCU_U_GCCAUCA___G___GUGGUGGUAAUAUUUCUUAUUACCUACUUUAAAUAUUUUUAGGAGUUUCCGAAAGGG_UCUUAAAAGUAGAUUACCUA
((......)).............((((((((......)))))))).........(((((((((((...(((....))).)))))))))))......... (-10.89 = -13.70 +   2.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006