Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,649,187 – 6,649,318 |
Length | 131 |
Max. P | 0.653499 |
Location | 6,649,187 – 6,649,286 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.54 |
Mean single sequence MFE | -22.14 |
Consensus MFE | -15.34 |
Energy contribution | -15.07 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.33 |
Mean z-score | -1.23 |
Structure conservation index | 0.69 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6649187 99 - 27905053 UCCACCGUUAUAGCUCUAACACCAUGGUUACCGGCCAUGGUCAAAACACACUACUGGACUUUCCAUUAAUUUA-----UACAACAGGAUGAAUGGUGGCAUGAA .((((((((...(..((...((((((((.....)))))))).............(((.....)))........-----......))..).))))))))...... ( -25.70) >DroVir_CAF1 50884 97 - 1 CUCGCCGUA--AAGUCUACAGCCAUGGUUACCAGCAGUGGUCAUAACAAGCAACUGGACUUUCCAUUAACUCG-----UAGAUAUUCAUGAAUUCUGACCUGGA ....((...--..((((((.(((((.((.....)).))))).............(((.....))).......)-----)))))..(((.(....))))...)). ( -16.20) >DroPse_CAF1 40039 102 - 1 UCCACCUUU--AAGUAUAAUACCAUGGUUACGGACCCUGGUCAAAACACACUGCUGGACUUUCCAUUAAUUUAACAUACACCACAGGAUGAAUUGUGGUAUGAA .........--.......((((((..(((...(((....)))....((..(((.(((.......................))))))..)))))..))))))... ( -20.40) >DroEre_CAF1 34918 99 - 1 UCCACCGCUUUGGCUCUAACGCCAUGGUUACCGGCCAUGGUCAAAACACGCUACUGGACUUUCCAUUAAUUUA-----UACAACAGGAUGAAUGGUGGCAUGAA .(((((....((((......((((((((.....))))))))........)))).(((.....)))...(((((-----(........)))))))))))...... ( -25.14) >DroAna_CAF1 35369 98 - 1 UCCACCAUUAAAG-UCUAACACCAUGGUUACCGGCCAUGGUCAAAACACGCUACUGGACUUUCCAUUAAUUUA-----UACAACAGGAUGAACGGUGGCAUGAA .............-......((((((((.....)))))))).....((.(((((((..(..(((.........-----.......))).)..))))))).)).. ( -24.99) >DroPer_CAF1 47323 102 - 1 UCCACCUUU--AAGUAUAAUACCAUGGUUACGGACCCUGGUCAAAACACACUGCUGGACUUUCCAUUAAUUUAACAUACACCACAGGAUGAAUUGUGGUAUGAA .........--.......((((((..(((...(((....)))....((..(((.(((.......................))))))..)))))..))))))... ( -20.40) >consensus UCCACCGUU__AAGUCUAACACCAUGGUUACCGGCCAUGGUCAAAACACACUACUGGACUUUCCAUUAAUUUA_____UACAACAGGAUGAAUGGUGGCAUGAA .((((...............((((((((.....)))))))).............(((.....))).............................))))...... (-15.34 = -15.07 + -0.27)
Location | 6,649,218 – 6,649,318 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 80.25 |
Mean single sequence MFE | -17.55 |
Consensus MFE | -11.15 |
Energy contribution | -10.98 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.36 |
Mean z-score | -1.41 |
Structure conservation index | 0.64 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527825 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6649218 100 - 27905053 AUACAUAUUCCCGAAGUGACCUCUCUCUA--GUUUCCACCGUUAUAGCUCUAACACCAUGGUUACCGGCCAUGGUCAAAACACACUACUGGACUUUCCAUUA ........(((.(.((((...........--.........((((......))))((((((((.....)))))))).......)))).).))).......... ( -20.60) >DroPse_CAF1 40075 98 - 1 AUAUAUAUUCAUAAAAUGACCUCUCUCUA--UAUUCCACCUUU--AAGUAUAAUACCAUGGUUACGGACCCUGGUCAAAACACACUGCUGGACUUUCCAUUA ................(((((....((..--((..(((.....--.............))).))..))....)))))...........(((.....)))... ( -11.37) >DroGri_CAF1 49617 96 - 1 AUGCAAGUUCUUGUAAUGACCUCUCU--G--GCUCUCGCCGUA--AAGUCUAUAGCCAUGGUUACCAGUGGUGGUCAAAACAUACGACUGGACUUUCCAUUA .(((((....))))).(((((....(--(--(((...((....--..))....))))).)))))(((((.(((((....)).))).)))))........... ( -23.00) >DroEre_CAF1 34949 100 - 1 AUACAUAUUCCCGAAGUGACCUCUCUCUA--UUUUCCACCGCUUUGGCUCUAACGCCAUGGUUACCGGCCAUGGUCAAAACACGCUACUGGACUUUCCAUUA ..........((((((((...........--........)))))))).......((((((((.....)))))))).............(((.....)))... ( -21.81) >DroAna_CAF1 35400 101 - 1 AUACUUAUUCCCGAAGUGACCUCUCUCUAUAUUUUCCACCAUUAAAG-UCUAACACCAUGGUUACCGGCCAUGGUCAAAACACGCUACUGGACUUUCCAUUA .(((((.......))))).........................((((-((((..((((((((.....)))))))).............))))))))...... ( -17.16) >DroPer_CAF1 47359 98 - 1 AUAUAUAUUCAUAAAAUGACCUCUCUCUA--UAUUCCACCUUU--AAGUAUAAUACCAUGGUUACGGACCCUGGUCAAAACACACUGCUGGACUUUCCAUUA ................(((((....((..--((..(((.....--.............))).))..))....)))))...........(((.....)))... ( -11.37) >consensus AUACAUAUUCCCGAAAUGACCUCUCUCUA__UUUUCCACCGUU__AAGUCUAACACCAUGGUUACCGGCCAUGGUCAAAACACACUACUGGACUUUCCAUUA ......................................................((((((((.....)))))))).............(((.....)))... (-11.15 = -10.98 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:46 2006