Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,648,015 – 6,648,111 |
Length | 96 |
Max. P | 0.551518 |
Location | 6,648,015 – 6,648,111 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -24.56 |
Energy contribution | -24.32 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.09 |
Structure conservation index | 0.93 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6648015 96 - 27905053 UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGGGGCAGAC---CCCACCU ..((((....))))........((..((((......(((((............)))))....))).)..))......(.(((((....)---)))).). ( -24.00) >DroSec_CAF1 33184 96 - 1 UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGUGGCAGAC---CCCACCU ..((((....)))).......(((((.....(((..(((((............))))).........((((((((...)))))))))))---..))))) ( -26.00) >DroSim_CAF1 33451 96 - 1 UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGUGGCAGAC---CCCACCU ..((((....)))).......(((((.....(((..(((((............))))).........((((((((...)))))))))))---..))))) ( -26.00) >DroEre_CAF1 33714 99 - 1 UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCUCAUACGAUGGGGCAGACCACCUCACCU ..((((....))))......((((((.....(((..(((((............))))).........((((((((...))))))))))))))))).... ( -29.40) >DroYak_CAF1 33588 95 - 1 UCGAAAUAGUUUUCAUA-UAGAGGCGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCUCAUACGAUGGGGCAGGU---CUCACCU ..((((....))))...-..((((((((((......(((((............)))))....))).)))))))....(.(((((....)---)))).). ( -26.50) >consensus UCGAAAUAGUUUUCAUAAUAGAGGUGCCAAUGUCGCACGCCACAUAUUUCCCGGGCGUUAAUUUGAGUGCCACAUACGAUGGGGCAGAC___CCCACCU ..((((....)))).......(((((.....(((..(((((............))))).........((((((((...))))))))))).....))))) (-24.56 = -24.32 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:44 2006