Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,647,215 – 6,647,308 |
Length | 93 |
Max. P | 0.600576 |
Location | 6,647,215 – 6,647,308 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -25.73 |
Consensus MFE | -22.12 |
Energy contribution | -22.29 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.49 |
Structure conservation index | 0.86 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6647215 93 + 27905053 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40) >DroSec_CAF1 32378 93 + 1 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40) >DroSim_CAF1 32641 93 + 1 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.40) >DroEre_CAF1 32935 93 + 1 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU-UUGGCCGAGA---------AAUCGGUUUCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((.(....)..-..((((((..---------..)))))).)))))).)).))))). ( -26.20) >DroYak_CAF1 32768 94 + 1 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUUUUUGGCCGAGA---------AAUCCGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((..((..((((((.....)))---------)))..))..)))))).)).))))). ( -21.30) >DroAna_CAF1 33334 100 + 1 GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUCGCAGCGUCGCAAGU---UGGCCGAGAAAUUGGAGAAAUCGGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((..((..((---(..((((....))))...)))..))..)))))).)).))))). ( -27.70) >consensus GAUUCAAUAAACAAACGGUAUUAUUAAAUAAUGCGCUCGUUUUGCAGCGUCGCAAGUU_UUGGCCGAGA_________AAUCGGUUCCGCUGCCCGAUUUGUC ..........((((((((((((((...))))))).........((((((.(....).....((((((.............)))))).)))))).)).))))). (-22.12 = -22.29 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:43 2006