Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,646,880 – 6,646,970 |
Length | 90 |
Max. P | 0.992933 |
Location | 6,646,880 – 6,646,970 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.76 |
Mean single sequence MFE | -24.52 |
Consensus MFE | -14.23 |
Energy contribution | -14.10 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.13 |
Mean z-score | -2.56 |
Structure conservation index | 0.58 |
SVM decision value | 2.36 |
SVM RNA-class probability | 0.992933 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6646880 90 + 27905053 -------UGCCACUUGGCCCAUACUGUAGUCGUUGCCGUCGACGACUGCAACACCC-CCUCCAAGUGCACUGGAAGAAAUACUA-----------CAAAAAAUCUUCAU -------(((.((((((.......(((((((((((....)))))))))))......-...)))))))))...(((((.......-----------.......))))).. ( -27.13) >DroSim_CAF1 32295 102 + 1 -------UGCCACUUGGCCCAUACUGUAGUCGUUGCCGUCGACGACUGCAACACCCCCCUCCAAGUGCACUGGAAAAAAUGCUAUAAAAAUAUUGCAAAAAAUGUUCAU -------(((.((((((.......(((((((((((....)))))))))))..........))))))))).((((.....(((.(((....))).))).......)))). ( -26.23) >DroEre_CAF1 32576 91 + 1 -------UGCCACUUGGCCCAUACUUUGGCCGUUGCCGUCGACGACUGCAACACCC-CCUCCAACUGCACUGGGAAAAAUGUAUUCAAAAUA----------CAUGCAG -------(((.....((((........))))(((((.(((...))).)))))...(-((............)))....((((((.....)))----------)))))). ( -23.50) >DroYak_CAF1 32382 108 + 1 UGCCUUUUGCCACUUUGCCCAUACUUUGGCCGUUGCCGUCGACGACUGCAGCACCC-CCUCCAACUGCACUGGAAAAAAUCUACUCAGAAUAUUACACAUAAUAUUCAA ..((...(((......(((........))).(((((.(((...))).)))))....-.........)))..))..............((((((((....)))))))).. ( -21.20) >consensus _______UGCCACUUGGCCCAUACUGUAGCCGUUGCCGUCGACGACUGCAACACCC_CCUCCAACUGCACUGGAAAAAAUGCAAUCAAAAUA___CAAAAAAUAUUCAU ........(((....))).............(((((.(((...))).))))).......((((.......))))................................... (-14.23 = -14.10 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:42 2006