Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,644,830 – 6,644,934 |
Length | 104 |
Max. P | 0.572118 |
Location | 6,644,830 – 6,644,934 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 96.79 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -17.95 |
Energy contribution | -18.07 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.98 |
Structure conservation index | 0.87 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.572118 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6644830 104 + 27905053 UUCUUUUUCUCUUUGGCUCAUUUUCAAGCAUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUACGGUUUUGAUCAGUUC ............((((.(((...((((((....(((.((.(((((((((((........)))...)))))))).)))))....))))..))...)))))))... ( -21.50) >DroSec_CAF1 30026 104 + 1 UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC ..............((((....((((((((....(..((((((((((((((........)))...))))))))....)))..)......))))))))..)))). ( -20.30) >DroSim_CAF1 30278 104 + 1 UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC ..............((((....((((((((....(..((((((((((((((........)))...))))))))....)))..)......))))))))..)))). ( -20.30) >consensus UUCUUUUACUCUUUGGCUCAUUUUCAAACUUAUACUUAACACCAAGCCGGCUUUAUAUCGCUUUUGGUUUGGUUUUAGUUUUGGCUUUCGGUUUGGAUCAGUUC ..............((((....(((((((.......(((.(((((((((((........)))...)))))))).)))((....)).....)))))))..)))). (-17.95 = -18.07 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:41 2006