Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,643,379 – 6,643,481 |
Length | 102 |
Max. P | 0.755155 |
Location | 6,643,379 – 6,643,481 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.62 |
Mean single sequence MFE | -36.48 |
Consensus MFE | -27.94 |
Energy contribution | -29.14 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.78 |
Structure conservation index | 0.77 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6643379 102 + 27905053 UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAGCGUCCUCGACCAUGGGUACCUCUACCCAUACCAGCAGUAUCGACUGUGGCG ...........(((((((...)))))))......((..((((((..((..(((((...))).(((((((....)))))))....)).))..))))))..)). ( -39.20) >DroSec_CAF1 28604 100 + 1 UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAACGUCCUCGACCAUGGGUACC--UACCCAUACCAGCAGUAUCGACUGUGGCG ...........(((((((...)))))))......((..((((((..((....(((...))).((((((...--.)))))).......))..))))))..)). ( -36.00) >DroSim_CAF1 28856 100 + 1 UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAACGUCCUCGACCAUGGGUACC--UACCCAUACCAGCAGUAUCGACUGUGGCG ...........(((((((...)))))))......((..((((((..((....(((...))).((((((...--.)))))).......))..))))))..)). ( -36.00) >DroEre_CAF1 29120 94 + 1 UCCAUUUCAUCCGGGUCCAGAGGGCC-GAAACGAGCUGUAGUUGUCGCCAGCGUCCUCGACCAUGG-------UACCCAUGCCACCAGUAUCUACUGUGGCG ............(((((((...((.(-((.....((((..(....)..))))....))).)).)))-------.))))..(((((.(((....)))))))). ( -32.30) >DroYak_CAF1 28777 89 + 1 UCCAUUUCAUCCGGGUCCAGAGGGCC-G-----AGCUGUAGUUGUCGCCAGCGUCCUCGGCCAUGG-------AACCCAUGCCAGCAGUAUCCACUGUGGCG ............(((((((...((((-(-----((.....((((....))))...))))))).)))-------.))))..((((.((((....)))))))). ( -38.90) >consensus UCCAUUUCAUCCGGGUCCAGAGGGCCCGAACCGAGCUGCAGUUGUCGCCAGCGUCCUCGACCAUGGGUACC__UACCCAUACCAGCAGUAUCGACUGUGGCG ...........(((((((...)))))))......((..((((((..((....(((...))).((((((......)))))).......))..))))))..)). (-27.94 = -29.14 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:40 2006