Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,628,857 – 6,628,950 |
Length | 93 |
Max. P | 0.871994 |
Location | 6,628,857 – 6,628,950 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.04 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -15.22 |
Energy contribution | -14.42 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.40 |
Mean z-score | -1.97 |
Structure conservation index | 0.68 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6628857 93 - 27905053 AUUCAACGGCAGGUGCGUCGCUAUUUGGCCAAAAAGCGAGUGGCAGAACUUAAAAAUUCACGUGACGCACAAAAAGCCGAUGCUAAACC------CAAA ......((((..(((((((((((((((.(......))))))))).(((........)))....))))))).....))))..........------.... ( -28.00) >DroSec_CAF1 21408 93 - 1 AUUCAAAGGCAGGUGCGUCGCCAUUUGGCCCAGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAAGCCGAUGUUAAACC------CAAA .......(((..((((((((((....)))...(((..((((......)))).....)))....))))))).....)))...........------.... ( -24.60) >DroSim_CAF1 21918 93 - 1 AUUCAAAGGCAGGUGCGUCGUCAUUUGGCCAAGAAGCGAGUGGAAAAACUUAAAAAUUCACAUGACGCACAAAAAUCCGAUGCUAAACC------CAAA .......((((.(((((((((......((......))..(((((............))))))))))))))..........)))).....------.... ( -20.10) >DroEre_CAF1 22171 99 - 1 AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCACCAAGCGGGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACACGAUGGUAAACCUAAGCAUAAA ........((..(((((((((..(((..(((((.....)))))..))).............)))))))))...........((....))...))..... ( -25.66) >DroYak_CAF1 21721 93 - 1 AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCACGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACCCGAUGAUAAGCC------CAAA ..(((..((...(((((((((..((((....))))....(((((............))))))))))))))......))..)))......------.... ( -23.40) >DroPer_CAF1 32015 93 - 1 AUUCAAAGGCUAUUUCGCUGCUACUUGGCCAAAAAGAGAUUUGAAAAACGAAAGGAUUCAGAAAAGGAAAAACGACGUAAUGAUA--CC----CAUAGU .(((...(((((.............))))).........((((((...(....)..))))))....)))................--..----...... ( -12.62) >consensus AUUCAAAGGCAGGUGCGUCGCUAUUUGGCCAAGAAGCGAGUGGAAAAACUUAAAAAUUCACGUGACGCACAAAAACCCGAUGAUAAACC______CAAA ............((((((((((....)))..........(((((............)))))..)))))))............................. (-15.22 = -14.42 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:39 2006