Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,625,479 – 6,625,591 |
Length | 112 |
Max. P | 0.890342 |
Location | 6,625,479 – 6,625,591 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -29.97 |
Consensus MFE | -18.65 |
Energy contribution | -17.89 |
Covariance contribution | -0.76 |
Combinations/Pair | 1.28 |
Mean z-score | -2.34 |
Structure conservation index | 0.62 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6625479 112 + 27905053 UGAAGGGGUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGAUUUUUCAUCAAGUGAUGUUGAC (((((((.((((((((((.(((((..(((((.((.....((((((((...)))))))))).)))))..))))).)).....)))))))).)))))))((((......)))). ( -30.80) >DroSim_CAF1 18540 112 + 1 UAAAGGUUUUUCAUCAAGUGAAGUUGACUUGUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGAUUUUUCUUUUUCUGAGGAAGGCGGUUUUUCAAAUGAAGCAGAC ........((((((....(((((..((((.(((((((((((((((((...))))))))...((((..((....))..)))).)))))))))))))))))).))))))..... ( -26.20) >DroEre_CAF1 18196 112 + 1 UGAAGGUGGGUUUUCAAGUGAAGUUGACCUUCCUUUUUCUGAUGAAAGCGCUUUUUCAAGUGAAAUUGGCUUUUCCUUUUCGGAUGAAGGCGGGUUUUCAAGUGAAGUUGAC ...........(((((..((((...(((((.(((((.(((((.((((((.(..((((....))))..))))))).....))))).))))).)))))))))..)))))..... ( -32.90) >consensus UGAAGGUGUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGUUUUUCAUCAAGUGAAGUUGACUUUUCUUUUUCUGAUGAAGGCGGUUUUUCAAGUGAAGUUGAC ...........(((((..(((((........((((..(((((((((.....)))))))...((((..((....))..)))).))..)))).....)))))..)))))..... (-18.65 = -17.89 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:37 2006